Exploring and analysing single cell multi-omics data with VDJView

被引:0
作者
Jerome Samir
Simone Rizzetto
Money Gupta
Fabio Luciani
机构
[1] UNSW Sydney,School of Medical Sciences and Kirby Institute for Infection and Immunity
[2] Garvan Institute of Medical Research,undefined
来源
BMC Medical Genomics | / 13卷
关键词
Immune cells; scRNA-seq; T cell receptor; B cell receptor; Multi-omics;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 123 条
[1]  
Kaech SM(2012)Transcriptional control of effector and memory CD8+ T cell differentiation Nat Rev Immunol 12 749-761
[2]  
Cui W(2018)B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle Bioinformatics 34 2846-2847
[3]  
Rizzetto S(2018)Single-cell RNA sequencing to explore immune cell heterogeneity Nat Rev Immunol 18 35-45
[4]  
Koppstein DNP(2018)BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq Nat Methods 15 563-565
[5]  
Samir J(2016)T cell fate and clonality inference from single-cell transcriptomes Nat Methods 13 329-332
[6]  
Singh M(2016)Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells Immunol Cell Biol 94 604-611
[7]  
Reed JH(2017)Simultaneous epitope and transcriptome measurement in single cells Nat Methods 14 865-868
[8]  
Cai CH(2019)Integrative single-cell analysis Nat Rev Genet 20 257-272
[9]  
Lloyd AR(2019)Shiny-Seq: advanced guided transcriptome analysis BMC Res Notes 12 432-420
[10]  
Eltahla AA(2018)Integrating single-cell transcriptomic data across different conditions, technologies, and species Nat Biotechnol 36 411-1186