Alignment-free phylogeny of whole genomes using underlying subwords

被引：0
|
作者：
Matteo Comin
Davide Verzotto
机构：
[1] University of Padova,Department of Information Engineering
来源：
Algorithms for Molecular Biology | / 7卷
关键词：
Phylogeny; Alignment-free algorithms; Pattern discovery;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Alignment-Free Phylogenetic Reconstruction
    Daskalakis, Constantinos
    Roch, Sebastien
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS, 2010, 6044 : 123 - +
  • [42] SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction
    Rempel, Andreas
    Wittler, Roland
    BIOINFORMATICS, 2021, 37 (24) : 4868 - 4870
  • [43] CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets
    Anjum, Naser
    Nabil, Raian Latif
    Rafi, Rakibul Islam
    Bayzid, Md. Shamsuzzoha
    Rahman, M. Saifur
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 20 (01) : 196 - 205
  • [44] Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
    Lau, Anna-Katharina
    Doerrer, Svenja
    Leimeister, Chris-Andre
    Bleidorn, Christoph
    Morgenstern, Burkhard
    BMC BIOINFORMATICS, 2019, 20 (01):
  • [45] Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
    Lau A.-K.
    Dörrer S.
    Leimeister C.-A.
    Bleidorn C.
    Morgenstern B.
    BMC Bioinformatics, 2019, 20 (Suppl 20)
  • [46] Tetranucleotide usage in mycobacteriophage genomes: alignment-free methods to cluster phage and infer evolutionary relationships
    Benjamin Siranosian
    Emma Herold
    Edward Williams
    Chen Ye
    Christopher de Graffenried
    BMC Bioinformatics, 16
  • [47] An Algorithm for Alignment-free Sequence Comparison using Logical Match
    Shanker, Sanil
    Austin, Jim
    Sherly, Elizabeth
    2010 2ND INTERNATIONAL CONFERENCE ON COMPUTER AND AUTOMATION ENGINEERING (ICCAE 2010), VOL 3, 2010, : 536 - 538
  • [48] An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data
    Fan, Huan
    Ives, Anthony R.
    Surget-Groba, Yann
    Cannon, Charles H.
    BMC GENOMICS, 2015, 16
  • [49] Tetranucleotide usage in mycobacteriophage genomes: alignment-free methods to cluster phage and infer evolutionary relationships
    Siranosian, Benjamin
    Herold, Emma
    Williams, Edward
    Ye, Chen
    de Graffenried, Christopher
    BMC BIOINFORMATICS, 2015, 16
  • [50] An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data
    Huan Fan
    Anthony R. Ives
    Yann Surget-Groba
    Charles H. Cannon
    BMC Genomics, 16
12345