Alignment-free phylogeny of whole genomes using underlying subwords

被引:0
|
作者
Matteo Comin
Davide Verzotto
机构
[1] University of Padova,Department of Information Engineering
关键词
Phylogeny; Alignment-free algorithms; Pattern discovery;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] Alignment-free sequence comparison for virus genomes based on location correlation coefficient
    He, Lily
    Sun, Siyang
    Zhang, Qianyue
    Bao, Xiaona
    Li, Peter K.
    INFECTION GENETICS AND EVOLUTION, 2021, 96
  • [32] Whole-Genome Phylogeny by virtue of Unic Subwords
    Comin, Matteo
    Verzotto, Davide
    2012 23RD INTERNATIONAL WORKSHOP ON DATABASE AND EXPERT SYSTEMS APPLICATIONS (DEXA), 2012, : 190 - 194
  • [33] Alignment-free methods for polyploid genomes: Quick and reliable genetic distance estimation
    VanWallendael, Acer
    Alvarez, Mariano
    MOLECULAR ECOLOGY RESOURCES, 2022, 22 (02) : 612 - 622
  • [34] An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes
    Arunachalam, Manonmani
    Jayasurya, Karthik
    Tomancak, Pavel
    Ohler, Uwe
    BIOINFORMATICS, 2010, 26 (17) : 2109 - 2115
  • [35] Genome-based phylogeny of dsDNA viruses by a novel alignment-free method
    Gao, Yang
    Luo, Liaofu
    GENE, 2012, 492 (01) : 309 - 314
  • [36] Alignment of whole genomes
    Delcher, AL
    Kasif, S
    Fleischmann, RD
    Peterson, J
    White, O
    Salzberg, SL
    NUCLEIC ACIDS RESEARCH, 1999, 27 (11) : 2369 - 2376
  • [37] Alignment-free homology detection
    Tang, Lin
    NATURE METHODS, 2024, 21 (10) : 1785 - 1785
  • [38] Alignment-free optical modules using optical microconnectors
    Miyazaki, D
    Masuda, S
    Matsushita, K
    JOURNAL OF OPTICS A-PURE AND APPLIED OPTICS, 1999, 1 (02): : 333 - 337
  • [39] An alignment-free test for recombination
    Haubold, Bernhard
    Krause, Linda
    Horn, Thomas
    Pfaffelhuber, Peter
    BIOINFORMATICS, 2013, 29 (24) : 3121 - 3127
  • [40] Alignment-free sequence comparison using absent words
    Charalampopoulos, Panagiotis
    Crochemore, Maxime
    Fici, Gabriele
    Mercas, Robert
    Pissis, Solon R.
    INFORMATION AND COMPUTATION, 2018, 262 : 57 - 68