Alignment-free phylogeny of whole genomes using underlying subwords

被引:0
|
作者
Matteo Comin
Davide Verzotto
机构
[1] University of Padova,Department of Information Engineering
关键词
Phylogeny; Alignment-free algorithms; Pattern discovery;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Alignment-free phylogeny of whole genomes using underlying subwords
    Comin, Matteo
    Verzotto, Davide
    ALGORITHMS FOR MOLECULAR BIOLOGY, 2012, 7
  • [2] Using alignment-free methods as preprocessing stage to classification whole genomes
    Shanan, Najah Abed Alhadi
    Lafta, Hussein Attya
    Al-Rashid, Sura Z.
    INTERNATIONAL JOURNAL OF NONLINEAR ANALYSIS AND APPLICATIONS, 2021, 12 (02): : 1531 - 1539
  • [3] Alignment-free sequence comparison method based on whole genomes and its application to virus phylogeny
    College of Information and Electrical Engineering, China Agricultural University, Beijing 100083, China
    不详
    Tien Tzu Hsueh Pao, 2006, 2 (277-281):
  • [4] CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool Based on Composition Vectors of Genomes
    Zuo, Guanghong
    GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 19 (04) : 662 - 667
  • [5] CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool Based on Composition Vectors of Genomes
    Guanghong Zuo
    Genomics,Proteomics & Bioinformatics, 2021, (04) : 662 - 667
  • [6] An alignment-free method for phylogeny estimation using maximum likelihood
    Zahin, Tasfia
    Abrar, Md. Hasin
    Jewel, Mizanur Rahman
    Tasnim, Tahrina
    Bayzid, Md. Shamsuzzoha
    Rahman, Atif
    BMC BIOINFORMATICS, 2025, 26 (01):
  • [7] Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method
    Wu, Guohong Albert
    Jun, Se-Ran
    Sims, Gregory E.
    Kim, Sung-Hou
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (31) : 12826 - 12831
  • [8] An Alignment-Free Distance Measure for Closely Related Genomes
    Haubold, Bernhard
    Domazet-Loso, Mirjana
    Wiehe, Thomas
    COMPARATIVE GENOMICS, PROCEEDINGS, 2008, 5267 : 87 - +
  • [9] Establishing the phylogeny of Prochlorococcus with a new alignment-free method
    Zhao, Xin
    Tian, Kun
    He, Rong L.
    Yau, Stephen S. -T.
    ECOLOGY AND EVOLUTION, 2017, 7 (24): : 11057 - 11065
  • [10] Dissimilarities in alignment-free methods for phylogenetic analysis based on genomes
    Yu, Zu-Guo (yuzuguo@aliyun.com), 1600, Bentham Science Publishers (09):