ConSole: using modularity of Contact maps to locate Solenoid domains in protein structures

被引：0
|
作者：
Thomas Hrabe
Adam Godzik
机构：
[1] Sanford-Burnham Medical Research Institute,Program in Bioinformatics and Systems Biology
来源：
BMC Bioinformatics | / 15卷
关键词：
Protein repeat detection; Solenoid structure; Contact map; Template matching; Machine learning;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 41 条
  • [1] ConSole: using modularity of Contact maps to locate Solenoid domains in protein structures
    Hrabe, Thomas
    Godzik, Adam
    BMC BIOINFORMATICS, 2014, 15
  • [2] Dynamic contact maps of protein structures
    Sonnhammer, ELL
    Wootton, JC
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1998, 16 (01): : 1 - +
  • [3] Protein folding using contact maps
    Vendruscolo, M
    Domany, E
    VITAMINS AND HORMONES - ADVANCES IN RESEARCH AND APPLICATIONS, VOL 58, 2000, 58 : 171 - 212
  • [4] Protein folding using contact maps and contact vectors
    Vendruscolo, M
    ARTIFICIAL INTELLIGENCE AND HEURISTIC METHODS IN BIOINFORMATICS, 2003, 183 : 75 - 82
  • [5] Protein contact maps: A binary depiction of protein 3D structures
    Emerson, Isaac Arnold
    Amala, Arumugam
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2017, 465 : 782 - 791
  • [6] On using fuzzy contact maps for protein structure comparison
    Gonzalez, Juan R.
    Pelta, David A.
    2007 IEEE INTERNATIONAL CONFERENCE ON FUZZY SYSTEMS, VOLS 1-4, 2007, : 1655 - 1660
  • [7] A fuzzy sets based generalization of contact maps for the overlap of protein structures
    Pelta, D
    Krasnogor, N
    Bousono-Calzon, C
    Verdegay, JL
    Hirst, J
    Burke, E
    FUZZY SETS AND SYSTEMS, 2005, 152 (01) : 103 - 123
  • [8] Reconstruction of 3D structures from protein contact maps
    Vassura, Marco
    Margara, Luciano
    Di Lena, Pietro
    Medri, Filippo
    Fariselli, Piero
    Casadio, Rita
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2008, 5 (03) : 357 - 367
  • [9] On the Reconstruction of Three-dimensional Protein Structures from Contact Maps
    Di Lena, Pietro
    Vassura, Marco
    Margara, Luciano
    Fariselli, Piero
    Casadio, Rita
    ALGORITHMS, 2009, 2 (01) : 76 - 92
  • [10] Reconstruction of 3D structures from protein contact maps
    Vassura, Marco
    Margara, Luciano
    Medri, Filippo
    di Lena, Pietro
    Fariselli, Piero
    Casadio, Rita
    BIOINFORMATICS RESEARCH AND APPLICATIONS, PROCEEDINGS, 2007, 4463 : 578 - +
12345