ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data

被引：0
|
作者：
Giorgos Minas
Hiroshi Momiji
Dafyd J. Jenkins
Maria J. Costa
David A. Rand
Bärbel Finkenstädt
机构：
[1] University of Warwick,Systems Biology Centre
[2] University of Warwick,Department of Statistics
[3] University of Warwick,Mathematics Institute
[4] University of Warwick,School of Life Sciences
来源：
BMC Bioinformatics | / 18卷
关键词：
Gene transcription; Time series; Transcriptional switches; Circadian timing;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data
    Minas, Giorgos
    Momiji, Hiroshi
    Jenkins, Dafyd J.
    Costa, Maria J.
    Rand, David A.
    Finkenstadt, Barbel
    BMC BIOINFORMATICS, 2017, 18
  • [2] Reconstructing Generalized Logical Networks of Transcriptional Regulation in Mouse Brain from Temporal Gene Expression Data
    Song, Mingzhou
    Lewis, Chris K.
    Lance, Eric R.
    Chesler, Elissa J.
    Yordanova, Roumyana Kirova
    Langston, Michael A.
    Lodowski, Kerrie H.
    Bergeson, Susan E.
    EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY, 2009, (01)
  • [3] Reconstructing boolean networks from noisy gene expression data
    Yun, Z
    Keong, KC
    2004 8TH INTERNATIONAL CONFERENCE ON CONTROL, AUTOMATION, ROBOTICS AND VISION, VOLS 1-3, 2004, : 1049 - 1054
  • [4] Reconstructing spatiotemporal gene expression data from partial observations
    Cartwright, Dustin A.
    Brady, Siobhan M.
    Orlando, David A.
    Sturmfels, Bernd
    Benfey, Philip N.
    BIOINFORMATICS, 2009, 25 (19) : 2581 - 2587
  • [5] Discovering Transcriptional Regulation by Integrating Protein-Protein Interaction, Gene Expression and Transcriptional Interaction Data
    Luo, Fei
    Li, Jinyan
    OPTIMIZATION AND SYSTEMS BIOLOGY, 2009, 11 : 109 - 116
  • [6] Reconstructing dynamic gene regulatory networks from sample-based transcriptional data
    Zhu, Hailong
    Rao, R. Shyama Prasad
    Zeng, Tao
    Chen, Luonan
    NUCLEIC ACIDS RESEARCH, 2012, 40 (21) : 10657 - 10667
  • [7] Reconstructing Dynamic Promoter Activity Profiles from Reporter Gene Data
    Kannan, Soumya
    Sams, Thomas
    Maury, Jerome
    Workman, Christopher T.
    ACS SYNTHETIC BIOLOGY, 2018, 7 (03): : 832 - 841
  • [8] Learning combinatorial transcriptional dynamics from gene expression data
    Opper, Manfred
    Sanguinetti, Guido
    BIOINFORMATICS, 2010, 26 (13) : 1623 - 1629
  • [9] Inference of transcriptional regulation relationships from gene expression data
    Kwon, AT
    Hoos, HH
    Ng, R
    BIOINFORMATICS, 2003, 19 (08) : 905 - 912
  • [10] Reconstructing repressor protein levels from expression of gene targets in Escherichia coli
    Khanin, R.
    Vinciotti, V.
    Wit, E.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (49) : 18592 - 18596
12345