MAS NMR detection of hydrogen bonds for protein secondary structure characterization

被引:0
|
作者
Daniel Friedrich
Jacqueline Perodeau
Andrew J. Nieuwkoop
Hartmut Oschkinat
机构
[1] Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP),Institut für Chemie und Biochemie
[2] Freie Universität Berlin,Department of Chemistry and Chemical Biology
[3] Rutgers University,Department of Molecular and Cellular Biology
[4] Harvard University,Department of Cancer Biology
[5] Dana-Farber Cancer Institute,undefined
来源
关键词
Fast MAS; Proton detection; Hydrogen bonds; Secondary structure; Cross polarization;
D O I
暂无
中图分类号
学科分类号
摘要
Hydrogen bonds are essential for protein structure and function, making experimental access to long-range interactions between amide protons and heteroatoms invaluable. Here we show that measuring distance restraints involving backbone hydrogen atoms and carbonyl- or α-carbons enables the identification of secondary structure elements based on hydrogen bonds, provides long-range contacts and validates spectral assignments. To this end, we apply specifically tailored, proton-detected 3D (H)NCOH and (H)NCAH experiments under fast magic angle spinning (MAS) conditions to microcrystalline samples of SH3 and GB1. We observe through-space, semi-quantitative correlations between protein backbone carbon atoms and multiple amide protons, enabling us to determine hydrogen bonding patterns and thus to identify β-sheet topologies and α-helices in proteins. Our approach shows the value of fast MAS and suggests new routes in probing both secondary structure and the role of functionally-relevant protons in all targets of solid-state MAS NMR.
引用
收藏
页码:247 / 256
页数:9
相关论文
共 50 条
  • [1] MAS NMR detection of hydrogen bonds for protein secondary structure characterization
    Friedrich, Daniel
    Perodeau, Jacqueline
    Nieuwkoop, Andrew J.
    Oschkinat, Hartmut
    JOURNAL OF BIOMOLECULAR NMR, 2020, 74 (4-5) : 247 - 256
  • [2] A study of protein secondary structure hydrogen bonds under oxidizing conditions
    Wood, Christopher M.
    Kadim, H. J.
    PROCEEDINGS OF THE FRONTIERS IN THE CONVERGENCE OF BIOSCIENCE AND INFORMATION TECHNOLOGIES, 2007, : 125 - 128
  • [3] Assignment and secondary structure of the YadA membrane protein by solid-state MAS NMR
    Shahid, Shakeel A.
    Markovic, Stefan
    Linke, Dirk
    van Rossum, Barth-Jan
    SCIENTIFIC REPORTS, 2012, 2
  • [4] Assignment and secondary structure of the YadA membrane protein by solid-state MAS NMR
    Shakeel A. Shahid
    Stefan Markovic
    Dirk Linke
    Barth-Jan van Rossum
    Scientific Reports, 2
  • [5] Characterization of protein secondary structure from NMR chemical shifts
    Mielke, Steven P.
    Krishnan, V. V.
    PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2009, 54 (3-4) : 141 - 165
  • [6] Solution NMR characterization of hydrogen bonds in a protein by indirect measurement of deuterium quadrupole couplings
    LiWang, AC
    Bax, A
    JOURNAL OF MAGNETIC RESONANCE, 1997, 127 (01) : 54 - 64
  • [7] Direct Detection of Hydrogen Bonds in Biopolymers by NMR Spectroscopy
    Gemmecker, Gerd
    Angewandte Chemie (International Edition in English), 2000, 39 (07): : 1224 - 1226
  • [8] PROTEIN NMR SPECTROSCOPY Hydrogen bonds under pressure
    Nielsen, Gerd
    Schwalbe, Harald
    NATURE CHEMISTRY, 2012, 4 (09) : 693 - 695
  • [9] Direct detection of hydrogen bonds in biopolymers by NMR spectroscopy
    Gemmecker, G
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2000, 39 (07) : 1224 - +
  • [10] NMR detection of bifurcated hydrogen bonds in large proteins
    Liu, Aizhuo
    Lu, Zhenwei
    Wang, Jifeng
    Yao, Lishan
    Li, Yue
    Yan, Honggao
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (08) : 2428 - 2429