Rule-based workflow management for bioinformatics

被引：0
作者：
John S. Conery
Julian M. Catchen
Michael Lynch
机构：
[1] University of Oregon,Department of Computer and Information Science
[2] Indiana University,Department of Biology
来源：
The VLDB Journal | 2005年 / 14卷
关键词：
Workflow; Rule-based system; Bioinformatics;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
We describe a data-centric software architecture for bioinformatics workflows and a rule-based workflow enactment system that uses declarative specifications of data dependences between steps to automatically order the execution of those steps. A data-centric view allows researchers to develop abstract descriptions of workflow products and provides mechanisms for describing workflow steps as objects. The rule-based approach supports an iterative design methodology for creating new workflows, where steps can be developed in small, incremental updates, and the object orientation allows workflow steps developed for one project to be reused in other projects.
引用
收藏
页码：318 / 329
页数：11
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