The performance of coalescent-based species tree estimation methods under models of missing data

被引：0
作者：
Michael Nute
Jed Chou
Erin K. Molloy
Tandy Warnow
机构：
[1] Department of Statistics,
[2] University of Illinois at Urbana-Champaign,undefined
[3] Department of Mathematics,undefined
[4] University of Illinois at Urbana-Champaign,undefined
[5] Department of Computer Science,undefined
[6] University of Illinois at Urbana-Champaign,undefined
来源：
BMC Genomics | / 19卷
关键词：
Species tree; Multi-species coalescent; Missing data; Incomplete lineage sorting; ASTRAL; ASTRID; MP-EST; SVDquartets;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 141 条
[1]  
Maddison Wayne P.(1997)Gene Trees in Species Trees Systematic Biology 46 523-536
[2]  
Pamilo P(1988)Relationships between gene trees and species trees Mol Biol Evol 5 568-83
[3]  
Nei M(2003)Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci Genetics 164 1645-56
[4]  
Rannala B(2009)IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING? Evolution 63 1-19
[5]  
Yang Z(2014)ASTRAL: genome-scale coalescent-based species tree estimation Bioinformatics 30 i541-i548
[6]  
Edwards Scott V.(2015)ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes Bioinformatics 31 i44-i52
[7]  
Mirarab S.(2009)Bayesian Inference of Species Trees from Multilocus Data Molecular Biology and Evolution 27 570-580
[8]  
Reaz R.(2008)BEST: Bayesian estimation of species trees under the coalescent model Bioinformatics 24 2542-2543
[9]  
Bayzid Md. S.(2010)BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis Bioinformatics 26 2910-2911
[10]  
Zimmermann T.(2010)Incomplete Lineage Sorting: Consistent Phylogeny Estimation from Multiple Loci IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 166-171
12345678910