Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114

被引:0
|
作者
Malek Marian
Takashi Fujikawa
Masafumi Shimizu
机构
[1] Gifu University,Faculty of Applied Biological Sciences
[2] National Agriculture and Food Research Organization (NARO),Institute of Fruit Tree and Tea Science
[3] Ibaraki University,College of Agriculture
来源
Archives of Microbiology | 2021年 / 203卷
关键词
Genomics; Taxogenomics; Plant–bacteria interaction; Biocontrol-related genes; Plant colonization;
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学科分类号
摘要
Mitsuaria sp. TWR114 is a biocontrol agent against tomato bacterial wilt (TBW). We aimed to gain genomic insights relevant to the biocontrol mechanisms and colonization ability of this strain. The draft genome size was found to be 5,632,523 bp, with a GC content of 69.5%, assembled into 1144 scaffolds. Genome annotation predicted a total of 4675 protein coding sequences (CDSs), 914 pseudogenes, 49 transfer RNAs, 3 noncoding RNAs, and 2 ribosomal RNAs. Genome analysis identified multiple CDSs associated with various pathways for the metabolism and transport of amino acids and carbohydrates, motility and chemotactic capacities, protection against stresses (oxidative, antibiotic, and phage), production of secondary metabolites, peptidases, quorum-quenching enzymes, and indole-3-acetic acid, as well as protein secretion systems and their related appendages. The genome resource will extend our understanding of the genomic features related to TWR114’s biocontrol and colonization abilities and facilitate its development as a new biopesticide against TBW.
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页码:3373 / 3388
页数:15
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