The Merrifield-Simmons index (σ\documentclass[12pt]{minimal}
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\begin{document}$$\sigma $$\end{document}) is an important molecular descriptor in chemical graph theory. Merrifield-Simmons index is defined as the total number of independent sets of the graph. The first Zagreb index (M1\documentclass[12pt]{minimal}
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\begin{document}$$M_{1}$$\end{document}), second Zagreb index (M2\documentclass[12pt]{minimal}
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\begin{document}$$M_{2}$$\end{document}), forgotten index (F) are another three important molecular descriptors in chemical graph theory, which often used to study molecular complexity, chirality, and other chemical properties. In this paper, we study the relationship between the Merrifield-Simmons index σ\documentclass[12pt]{minimal}
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\begin{document}$$\sigma $$\end{document} and M1\documentclass[12pt]{minimal}
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\begin{document}$$M_{1}$$\end{document} (resp. M2\documentclass[12pt]{minimal}
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\begin{document}$$M_{2}$$\end{document}, F). We determine some sharp bounds on the difference between σ\documentclass[12pt]{minimal}
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\begin{document}$$\sigma $$\end{document} and M1\documentclass[12pt]{minimal}
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\begin{document}$$M_{1}$$\end{document} (resp. M2\documentclass[12pt]{minimal}
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\begin{document}$$M_{2}$$\end{document}, F) for (connected) graphs, self-centered graphs, graphs with given independence number. We also compare σ\documentclass[12pt]{minimal}
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\begin{document}$$\sigma $$\end{document} with M1\documentclass[12pt]{minimal}
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\begin{document}$$M_{1}$$\end{document} (resp. M2\documentclass[12pt]{minimal}
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\begin{document}$$M_{2}$$\end{document}, F) for (molecular) graphs, (molecular) trees, hexagonal chains, bipartite graphs, k-power graphs, graphs with given the number of cut vertices.