High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176

被引：0
作者：
Sofie E. De Meyer
Rui Tian
Rekha Seshadri
TBK Reddy
Victor Markowitz
Natalia Ivanova
Amrita Pati
Tanja Woyke
Nikos Kyrpides
Ron Yates
John Howieson
Wayne Reeve
机构：
[1] Murdoch University,Centre for Rhizobium Studies
[2] DOE Joint Genome Institute,Biological Data Management and Technology Center
[3] Lawrence Berkeley National Laboratory,Department of Biological Sciences
[4] King Abdulaziz University,undefined
[5] Department of Agriculture and Food,undefined
来源：
Standards in Genomic Sciences | / 10卷
关键词：
Root-nodule bacteria; Nitrogen fixation; Rhizobia; GEBA-RNB;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N2-fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sandy soils, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. Here we describe the features of Burkholderia sp. strain WSM4176, which represents a potential inoculant quality strain for L. ambigua, together with sequence and annotation. The 9,065,247 bp high-quality-draft genome is arranged in 13 scaffolds of 65 contigs, contains 8369 protein-coding genes and 128 RNA-only encoding genes, and is part of the GEBA-RNB project proposal (Project ID 882).
引用
收藏
相关论文
共 137 条
[1]  
Garau G(2009)Novel strains of nodulating Soil Biol Biochem 41 125-134
[2]  
Yates RJ(2013) have a role in nitrogen fixation with papilionoid herbaceous legumes adapted to acid, infertile soils Soil Biol Biochem 60 55-64
[3]  
Deiana P(2004)Novel Soil Biol Biochem 36 1319-1329
[4]  
Howieson JG(1988) bacteria isolated from Plant Soil 105 179-188
[5]  
Howieson JG(1974) - a perennial suffrutescent legume of the fynbos J Gen Microbiol 84 188-198
[6]  
De Meyer SE(2009)Root-nodule bacteria from indigenous legumes in the north-west of Western Australia and their interaction with exotic legumes Environ Microbiol 11 762-778
[7]  
Vivas-Marfisi A(2015)Selection for acid tolerance in Stand Genomic Sci 10 14-579
[8]  
Ratnayake S(2012)R factor transfer in Nucleic Acids Res 40 D571-D567
[9]  
Ardley JK(2014)Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions Nucleic Acids Res 42 D560-1518
[10]  
Yates RJ(2012)A genomic encyclopedia of the root nodule bacteria: assessing genetic diversity through a systematic biogeographic survey PLoS ONE 7 1513-829
12345678910