Biological nutrient removal (BNR) systems remove carbon, nitrogen, and phosphorus from wastewaters through biodegradation of organic compounds, oxidation of ammonia-N to nitrate-N, reduction of nitrate-N to N2 gas, and sequestration of phosphorus as polyphosphate. The microbial community in such systems is complex because it must contain heterotrophic bacteria capable of aerobic respiration, anaerobic respiration, and fermentation; specialized heterotrophic bacteria that can store polyphosphate; and autotrophic nitrifying bacteria that can withstand long periods without oxygen. Although the basic design principles for BNR systems are reasonably well established, it is becoming apparent that a greater understanding of the microbial interactions involved is required to increase system reliability. For example, although the environment established for the selection of phosphorus accumulating organisms was thought to give them a strong competitive advantage over other heterotrophic bacteria, this has turned out not to be the case. Rather, glycogen accumulating organisms can compete quite effectively in the same environment. Furthermore, BNR systems have suffered from problems with sludge settleability, even though many of the system characteristics are considered to be conducive to the suppression of filamentous bacteria. Finally, the use of molecular techniques has revealed that the autotrophic nitrifying bacteria are different from those that had been considered to be present. This paper reviews the microbial ecology of BNR systems, establishes how molecular biology techniques are changing our understanding of that ecology, and suggests ways in which engineering control can be exerted over community structure, thereby increasing the reliability of BNR systems.
