Single-cell RNA-Seq and bulk RNA-Seq reveal reliable diagnostic and prognostic biomarkers for CRC

被引：0
作者：
Xing Zhang
Longkun Yang
Ying Deng
Zhicong Huang
Hao Huang
Yuying Wu
Baochang He
Fulan Hu
机构：
[1] The School of Public Health,Department of Epidemiology
[2] Fujian Medical University,Department of Epidemiology, School of Public Health
[3] Shenzhen University Health Science Center,Department of Epidemiology and Health Statistics, School of Public Health
[4] Shenzhen University Medical School,undefined
[5] Zhengzhou University,undefined
来源：
Journal of Cancer Research and Clinical Oncology | 2023年 / 149卷
关键词：
Colorectal cancer; Bulk RNA sequencing; Single-cell RNA sequencing; Tumor microenvironment; Diagnosis; Prognosis;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
页码：9805 / 9821
页数：16
相关论文
共 50 条
  • [41] Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
    Van den Berge, Koen
    Perraudeau, Fanny
    Soneson, Charlotte
    Love, Michael I.
    Risso, Davide
    Vert, Jean-Philippe
    Robinson, Mark D.
    Dudoit, Sandrine
    Clement, Lieven
    GENOME BIOLOGY, 2018, 19
  • [42] Construction of monocyte-related prognosis model based on comprehensive analysis of bulk RNA-seq and single-cell RNA-seq in high-grade serous ovarian cancer
    Xu, Ye
    Tan, Shu
    Huang, Wei
    Wang, Yao-Xian
    MEDICINE, 2023, 102 (50) : E36548
  • [43] A comprehensive analysis of the potential role of necroptosis in hepatocellular carcinoma using single-cell RNA Seq and bulk RNA Seq
    Jiakang Chen
    Cuimin Chen
    Lili Tao
    Yusi Cai
    Chun Wang
    Journal of Cancer Research and Clinical Oncology, 2023, 149 : 13841 - 13853
  • [44] Application of computational algorithms for single-cell RNA-seq and ATAC-seq in neurodegenerative diseases
    Choi, Hwisoo
    Kim, Hyeonkyu
    Chung, Hoebin
    Lee, Dong-Sung
    Kim, Junil
    BRIEFINGS IN FUNCTIONAL GENOMICS, 2024,
  • [45] SCSA: A Cell Type Annotation Tool for Single-Cell RNA-seq Data
    Cao, Yinghao
    Wang, Xiaoyue
    Peng, Gongxin
    FRONTIERS IN GENETICS, 2020, 11
  • [46] Accurate feature selection improves single-cell RNA-seq cell clustering
    Su, Kenong
    Yu, Tianwei
    Wu, Hao
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (05)
  • [47] Coordinating single-cell and bulk RNA-seq in deciphering the intratumoral immune landscape and prognostic stratification of prostate cancer patients
    Sun, Zhou
    Wang, Jie
    Zhang, Qiang
    Meng, Xiangdi
    Ma, Zhaosen
    Niu, Jiqiang
    Guo, Rui
    Tran, Lisa Jia
    Zhang, Jing
    Liu, Yunfei
    Ye, Fangdie
    Ma, Baoluo
    ENVIRONMENTAL TOXICOLOGY, 2024, 39 (02) : 657 - 668
  • [48] Single-cell RNA-seq reveals early heterogeneity during aging in yeast
    Wang, Jincheng
    Sang, Yuchen
    Jin, Shengxian
    Wang, Xuezheng
    Azad, Gajendra Kumar
    McCormick, Mark A.
    Kennedy, Brian K.
    Li, Qing
    Wang, Jianbin
    Zhang, Xiannian
    Zhang, Yi
    Huang, Yanyi
    AGING CELL, 2022, 21 (11)
  • [49] SCDD: a novel single-cell RNA-seq imputation method with diffusion and denoising
    Liu, Jian
    Pan, Yichen
    Ruan, Zhihan
    Guo, Jun
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (05)
  • [50] Coupled single-cell and bulk RNA-seq analysis reveals the engulfment role of endothelial cells in atherosclerosis
    Xu, Jianxiong
    Wang, Jinxuan
    Zhang, Hongping
    Chen, Yidan
    Zhang, Xiaojuan
    Zhang, Ying
    Xie, Ming
    Xiao, Jun
    Qiu, Juhui
    Wang, Guixue
    GENES & DISEASES, 2024, 11 (05)
12345