Predicting direct protein interactions from affinity purification mass spectrometry data

被引：0
|
作者：
Ethan DH Kim
Ashish Sabharwal
Adrian R Vetta
Mathieu Blanchette
机构：
[1] McGill Centre for Bioinformatics,Department of Computer Science
[2] McGill University,Department of Mathematics and Statistics
[3] Cornell University,undefined
[4] McGill University,undefined
来源：
Algorithms for Molecular Biology | / 5卷
关键词：
Genetic Algorithm; Candidate Solution; Dense Region; Monte Carlo Sampling; Indirect Interaction;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Observations on different resin strategies for affinity purification mass spectrometry of a tagged protein
    Mali, Sujina
    Moree, Wilna J.
    Mitchell, Morgan
    Widger, William
    Bark, Steven J.
    ANALYTICAL BIOCHEMISTRY, 2016, 515 : 26 - 32
  • [32] SFINX: Straightforward Filtering Index for Affinity Purification Mass Spectrometry Data Analysis
    Titeca, Kevin
    Meysman, Pieter
    Gevaert, Kris
    Tavernier, Jan
    Laukens, Kris
    Martens, Lennart
    Eyckerman, Sven
    JOURNAL OF PROTEOME RESEARCH, 2016, 15 (01) : 332 - 338
  • [33] Sortase A mediated site-specific immobilization for identification of protein interactions in affinity purification-mass spectrometry experiments
    Kuropka, Benno
    Royla, Nadine
    Freund, Christian
    Krause, Eberhard
    PROTEOMICS, 2015, 15 (07) : 1230 - 1234
  • [34] Defining elastic fiber interactions by molecular fishing: an affinity purification and mass spectrometry approach
    Cain, S. A.
    McGovern, A.
    Small, E.
    Ward, L. J.
    Baldock, C.
    Shuttleworth, A.
    Kielty, C. M.
    INTERNATIONAL JOURNAL OF EXPERIMENTAL PATHOLOGY, 2010, 91 (06) : A33 - A33
  • [35] Mapping protein receptor-ligand interactions via in vivo chemical crosslinking, affinity purification, and differential mass spectrometry
    Kim, Kristine M.
    Yi, Eugene C.
    Kim, Youngsoo
    METHODS, 2012, 56 (02) : 161 - 165
  • [36] Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry
    Kaake, Robyn M.
    Wang, Xiaorong
    Huang, Lan
    MOLECULAR & CELLULAR PROTEOMICS, 2010, 9 (08) : 1650 - 1665
  • [37] Novel interactions of Saccharomyces cerevisiae type 1 protein phosphatase identified by single-step affinity purification and mass spectrometry
    Walsh, EP
    Lamont, DJ
    Beattie, KA
    Stark, MJR
    BIOCHEMISTRY, 2002, 41 (07) : 2409 - 2420
  • [38] Pre- and Post-Processing Workflow for Affinity Purification Mass Spectrometry Data
    Fischer, Martina
    Zilkenat, Susann
    Gerlach, Roman G.
    Wagner, Samuel
    Renard, Bernhard Y.
    JOURNAL OF PROTEOME RESEARCH, 2014, 13 (05) : 2239 - 2249
  • [39] Mapping multiprotein complexes by affinity purification and mass spectrometry
    Collins, Mark O.
    Choudhary, Jyoti S.
    CURRENT OPINION IN BIOTECHNOLOGY, 2008, 19 (04) : 324 - 330
  • [40] Solid support resins and affinity purification mass spectrometry
    Havis, Spencer
    Moree, Wilna J.
    Mali, Sujina
    Bark, Steven J.
    MOLECULAR BIOSYSTEMS, 2017, 13 (03) : 456 - 462
12345