Nuclear and mitochondrial genomes of Polylopha cassiicola: the first assembly in Chlidanotinae (Tortricidae)

被引：0

作者：

Yang, Fangyuan ^{[1
]}

Cao, Li-Jun ^{[1
]}

Chen, Jin-Cui ^{[1
]}

Song, Wei ^{[1
]}

Yu, Yuzhu ^{[2
]}

Wei, Shu-Jun ^{[1
]}

机构：

[1] Beijing Acad Agr & Forestry Sci, Inst Plant Protect, Beijing, Peoples R China

[2] Guangxi Natl Qinlian Forest Farm, Nanning, Guangxi, Peoples R China

来源：

SCIENTIFIC DATA | 2024年 / 11卷 / 01期

基金：

中国国家自然科学基金;

关键词：

ALIGNMENT;

D O I：

10.1038/s41597-024-03255-7

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Tortricidae is one of the largest families in Lepidoptera, including subfamilies of Tortricinae, Olethreutinae, and Chlidanotinae. Here, we assembled the gap-free genome for the subfamily Chlidanotinae using Illumina, Nanopore, and Hi-C sequencing from Polylopha cassiicola, a pest of camphor trees in southern China. The nuclear genome is 302.03 Mb in size, with 36.82% of repeats and 98.4% of BUCSO completeness. The karyotype is 2n = 44 for males. We identified 15412 protein-coding genes, 1052 tRNAs, and 67 rRNAs. We also determined the mitochondrial genome of this species and annotated 13 protein-coding genes, 22 tRNAs, and one rRNA. These high-quality genomes provide valuable information for studying phylogeny, karyotypic evolution, and adaptive evolution of tortricid moths.

引用

页数：6

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