Exploiting structural and topological information to improve prediction of RNA-protein binding sites

被引:0
|
作者
Stefan R Maetschke
Zheng Yuan
机构
[1] The University of Queensland,Institute for Molecular Bioscience
[2] The University of Queensland,Institute for Molecular Bioscience and ARC Centre for Excellence in Bioinformatics
来源
BMC Bioinformatics | / 10卷
关键词
Support Vector Machine; Betweenness Centrality; Accessible Surface Area; Matthews Correlation Coefficient; Interface Residue;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] MAHyNet: Parallel Hybrid Network for RNA-Protein Binding Sites Prediction Based on Multi-Head Attention and Expectation Pooling
    Wang, Wei
    Sun, Zhenxi
    Liu, Dong
    Zhang, Hongjun
    Li, Juntao
    Wang, Xianfang
    Zhou, Yun
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 21 (03) : 416 - 427
  • [22] Dynamics of RNA-protein binding probed in cells
    Rissland, Olivia S.
    NATURE, 2021, 591 (7848) : 39 - 39
  • [23] Challenges in structural modeling of RNA-protein interactions
    Liu, Xudong
    Duan, Yingtian
    Hong, Xu
    Xie, Juan
    Liu, Shiyong
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2023, 81
  • [24] A Method for Predicting RNA-Protein Interaction and Interaction sites
    Wang, Tong
    Lu, Hong
    Li, Hongmei
    Cao, Xiaoxia
    PROCEEDINGS OF THE 2013 8TH INTERNATIONAL CONFERENCE ON COMPUTER SCIENCE & EDUCATION (ICCSE 2013), 2013, : 795 - 798
  • [25] Exploiting Genomic Features to Improve the Prediction of Transcription Factor-Binding Sites in Plants
    Riviere, Quentin
    Corso, Massimiliano
    Ciortan, Madalina
    Noel, Gregoire
    Verbruggen, Nathalie
    Defrance, Matthieu
    PLANT AND CELL PHYSIOLOGY, 2022, 63 (10) : 1457 - 1473
  • [26] Information of binding sites improves prediction of protein-protein interaction
    Patel, Tapan
    Pillay, Manoj
    Jawa, Rahul
    Liao, Li
    ICMLA 2006: 5TH INTERNATIONAL CONFERENCE ON MACHINE LEARNING AND APPLICATIONS, PROCEEDINGS, 2006, : 205 - +
  • [27] PREDICTING RNA-PROTEIN BINDING REGIONS USING SEQUENCE AND STRUCTURAL SPECIFICITIES BASED ON HMM
    Lv, J. J.
    Ren, F. B.
    He, Y. H.
    Li, W.
    Chen, L. N.
    BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY, 2015, 117 : 4 - 4
  • [28] RNA-protein binding kinetics in an automated microfluidic reactor
    Ridgeway, William K.
    Seitaridou, Effrosyni
    Phillips, Rob
    Williamson, James R.
    NUCLEIC ACIDS RESEARCH, 2009, 37 (21) : e142 - e142
  • [29] Exploiting contextual information to improve call prediction
    Fatima, Mehk
    Rextin, Aimal
    Hayat, Shamaila
    Nasim, Mehwish
    PLOS ONE, 2019, 14 (10):
  • [30] Paramagnetic NMR probe to study RNA-protein binding
    Seebald, Leah
    DeMott, Christopher
    Shekhtman, Alexander
    Royzen, Maksim
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 250