Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)

被引:0
作者
Hajnalka Daligault
Alla Lapidus
Ahmet Zeytun
Matt Nolan
Susan Lucas
Tijana Glavina Del Rio
Hope Tice
Jan-Fang Cheng
Roxanne Tapia
Cliff Han
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Ioanna Pagani
Natalia Ivanova
Marcel Huntemann
Konstantinos Mavromatis
Natalia Mikhailova
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Evelyne-Marie Brambilla
Manfred Rohde
Susanne Verbarg
Markus Göker
James Bristow
Jonathan A. Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C. Kyrpides
Hans-Peter Klenk
Tanja Woyke
机构
[1] DOE Joint Genome Institute,Bioscience Division
[2] Los Alamos National Laboratory,Biological Data Management and Technology Center
[3] Lawrence Berkeley National Laboratory,Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences
[4] Oak Ridge National Laboratory,undefined
[5] DSMZ - German Collection of Microorganisms and Cell Cultures GmbH,undefined
[6] HZI - Helmholtz Centre for Infection Research,undefined
[7] University of California Davis Genome Center,undefined
[8] The University of Queensland,undefined
来源
Standards in Genomic Sciences | 2011年 / 4卷
关键词
strictly aerobic; non-motile; Gram-negative; branching; sheathed; mesophilic; chemoorganotrophic; “; ”; GEBA;
D O I
暂无
中图分类号
学科分类号
摘要
Haliscomenobacter hydrossis van Veen et al. 1973 is the type species of the genus Haliscomenobacter, which belongs to order “Sphingobacteriales”. The species is of interest because of its isolated phylogenetic location in the tree of life, especially the so far genomically uncharted part of it, and because the organism grows in a thin, hardly visible hyaline sheath. Members of the species were isolated from fresh water of lakes and from ditch water. The genome of H. hydrossis is the first completed genome sequence reported from a member of the family “Saprospiraceae”. The 8,771,651 bp long genome with its three plasmids of 92 kbp, 144 kbp and 164 kbp length contains 6,848 protein-coding and 60 RNA genes, and is a part of the GenomicEncyclopedia ofBacteria andArchaea project.
引用
收藏
页码:352 / 360
页数:8
相关论文
共 119 条
  • [1] van Veen WL(1973)Investigations on the sheathed bacterium Antonie van Leeuwenhoek 39 207-216
  • [2] van der Kooij D(1983)Filamentous bacteria in activated sludge (bulking sludge). I. Occurrence of filamentous bacteria in a sewage treatment plant working with the activated sludge process (plug flow system). Zentralbl Bakteriol Microbiol Hyg B 177 436-450
  • [3] Geuze ECWA(2004)Occurrence and control of filamentous bulking in aerated wastewater treatment plants of the French paper industry Water Sci Technol 50 29-37
  • [4] van der Vlies AW(2011)Biocontrol of biomass bulking caused by Water Res 45 694-704
  • [5] Emmrich M(1990) using a newly isolated lytic bacteriophage J Mol Biol 215 403-410
  • [6] Ziegler M(2006)Bascic local alignment search tool Appl Environ Microbiol 72 5069-5072
  • [7] Rüden H(1980)Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB Program: electronic library and information systems 14 130-137
  • [8] Fourest E(2000)An algorithm for suffix stripping Mol Biol Evol 17 540-552
  • [9] Craperi D(2002)Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Bioinformatics 18 452-464
  • [10] Deschamps-Roupert C(2008)Multiple sequence alignment using partial order graphs Syst Biol 57 758-771