MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies

[1] McClintock B(1950)The origin and behavior of mutable loci in maize Proc Natl Acad Sci U S A 36 344-355

[2] Kapitonov VV(2008)A universal classification of eukaryotic transposable elements implemented in Repbase Nat Rev Genet. 9 411-412

[3] Jurka J(2007)A unified classification system for eukaryotic transposable elements Nat Rev Genet 8 973-982

[4] Wicker T(2008)The diversity of retrotransposons and the properties of their reverse transcriptases Virus Res 134 221-234

[5] Sabot F(2009)Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences Gene. 448 207-213

[6] Hua-Van A(2007)Telomere-associated endonuclease-deficient Penelope-like retroelements in diverse eukaryotes Proc Natl Acad Sci U S A 104 9352-9357

[7] Bennetzen JL(2015)A survey of transposable element classification systems--a call for a fundamental update to meet the challenge of their diversity and complexity Mol Phylogenet Evol 86 90-109

[8] Capy P(2017)Giant reverse transcriptase-encoding transposable elements at telomeres Mol Biol Evol 34 2245-2257

[9] Chalhoub B(1997)Transposable elements as sources of variation in animals and plants Proc Natl Acad Sci U S A 94 7704-7711

[10] Eickbush TH(2018)Transposable elements and polyploid evolution in animals Curr Opin Genet Dev 49 115-123

[1] McClintock B(1950)The origin and behavior of mutable loci in maize Proc Natl Acad Sci U S A 36 344-355

[2] Kapitonov VV(2008)A universal classification of eukaryotic transposable elements implemented in Repbase Nat Rev Genet. 9 411-412

[3] Jurka J(2007)A unified classification system for eukaryotic transposable elements Nat Rev Genet 8 973-982

[4] Wicker T(2008)The diversity of retrotransposons and the properties of their reverse transcriptases Virus Res 134 221-234

[5] Sabot F(2009)Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences Gene. 448 207-213

[6] Hua-Van A(2007)Telomere-associated endonuclease-deficient Penelope-like retroelements in diverse eukaryotes Proc Natl Acad Sci U S A 104 9352-9357

[7] Bennetzen JL(2015)A survey of transposable element classification systems--a call for a fundamental update to meet the challenge of their diversity and complexity Mol Phylogenet Evol 86 90-109

[8] Capy P(2017)Giant reverse transcriptase-encoding transposable elements at telomeres Mol Biol Evol 34 2245-2257

[9] Chalhoub B(1997)Transposable elements as sources of variation in animals and plants Proc Natl Acad Sci U S A 94 7704-7711

[10] Eickbush TH(2018)Transposable elements and polyploid evolution in animals Curr Opin Genet Dev 49 115-123