Regulation by the RNA-binding protein Unkempt at its effector interface

被引:2
作者
Shah, Kriti [1 ,2 ]
He, Shiyang [1 ,2 ]
Turner, David J. [3 ]
Corbo, Joshua [3 ,8 ]
Rebbani, Khadija [3 ]
Dominguez, Daniel [4 ]
Bateman, Joseph M. [5 ]
Cheloufi, Sihem [1 ,2 ,6 ]
Igreja, Catia [7 ]
Valkov, Eugene [3 ]
Murn, Jernej [1 ,2 ]
机构
[1] Univ Calif Riverside, Dept Biochem, 3401 Watkins Dr,Boyce Hall, Riverside, CA 92521 USA
[2] Ctr RNA Biol & Med, 900 Univ Ave, Riverside, CA 92521 USA
[3] NCI, RNA Biol Lab, Ctr Canc Res, Frederick, MD 21702 USA
[4] Univ N Carolina, Dept Pharmacol, Chapel Hill, NC 27599 USA
[5] Kings Coll London, Maurice Wohl Clin Neurosci Inst, 5 Cutcombe Rd, London SE5 9RX, England
[6] Univ Calif Riverside, Stem Cell Ctr, 900 Univ Ave, Riverside, CA 92521 USA
[7] Dept Integrat Evolutionary Biol, Max Planck Ring 9, D-72076 Tubingen, Germany
[8] Harvard Univ, Dept Mol & Cellular Biol, 52 Oxford St, Cambridge, MA 02138 USA
基金
美国国家卫生研究院;
关键词
MESSENGER-RNA; CCR4-NOT COMPLEX; TRANSLATIONAL REPRESSION; GENE; RECOGNITION; PABP; TRANSCRIPTOME; RECRUITMENT; EXPRESSION; PROTEOMICS;
D O I
10.1038/s41467-024-47449-4
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
How RNA-binding proteins (RBPs) convey regulatory instructions to the core effectors of RNA processing is unclear. Here, we document the existence and functions of a multivalent RBP-effector interface. We show that the effector interface of a conserved RBP with an essential role in metazoan development, Unkempt, is mediated by a novel type of 'dual-purpose' peptide motifs that can contact two different surfaces of interacting proteins. Unexpectedly, we find that the multivalent contacts do not merely serve effector recruitment but are required for the accuracy of RNA recognition by Unkempt. Systems analyses reveal that multivalent RBP-effector contacts can repurpose the principal activity of an effector for a different function, as we demonstrate for the reuse of the central eukaryotic mRNA decay factor CCR4-NOT in translational control. Our study establishes the molecular assembly and functional principles of an RBP-effector interface. How RNA-binding proteins (RBPs) regulate gene expression via effectors of RNA processing is unclear. Here, the authors dissect the effector interface of an essential RBP, Unkempt, and investigate its contribution to translational control in cells.
引用
收藏
页数:18
相关论文
共 50 条
  • [41] The regulation of AβPP expression by RNA-binding proteins
    Westmark, Cara J.
    Malter, James S.
    AGEING RESEARCH REVIEWS, 2012, 11 (04) : 450 - 459
  • [42] Arid5a, an RNA-Binding Protein in Immune Regulation: RNA Stability, Inflammation, and Autoimmunity
    Nyati, Kishan Kumar
    Zaman, Mohammad Mahabub-Uz
    Sharma, Praveen
    Kishimoto, Tadamitsu
    TRENDS IN IMMUNOLOGY, 2020, 41 (03) : 255 - 268
  • [43] Beyond RNA-binding domains: determinants of protein-RNA binding
    Zigdon, Inbal
    Carmi, Miri
    Brodsky, Sagie
    Rosenwaser, Zohar
    Barkai, Naama
    Jonas, Felix
    RNA, 2024, 30 (12) : 1620 - 1633
  • [44] Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4
    Foroushani, Amir K.
    Chim, Bryan
    Wong, Madeline
    Rastegar, Andre
    Smith, Patrick T.
    Wang, Saifeng
    Barbian, Kent
    Martens, Craig
    Hafner, Markus
    Muljo, Stefan A.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (42) : 26520 - 26530
  • [45] RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq
    Argaman, Liron
    Elgrably-Weiss, Maya
    Hershko, Tal
    Vogel, Joerg
    Altuvia, Shoshy
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (12) : 4621 - 4626
  • [46] The RNA-Binding and RNA-Melting Activities of the Multifunctional Protein Nucleobindin 1
    Mikhaylina, Alisa
    Svoeglazova, Arina
    Stolboushkina, Elena
    Tishchenko, Svetlana
    Kostareva, Olga
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (07)
  • [47] Applications of Cas9 as an RNA-programmed RNA-binding protein
    Nelles, David A.
    Fang, Mark Y.
    Aigner, Stefan
    Yeo, Gene W.
    BIOESSAYS, 2015, 37 (07) : 732 - 739
  • [48] The Role of RNA-Binding Protein HuR in Lung Cancer by RNA Sequencing Analysis
    Ye, Xiong
    Fu, Qiang
    Xiao, Hui
    FRONTIERS IN GENETICS, 2022, 13
  • [49] The RNA-Binding Motif Protein Family in Cancer: Friend or Foe?
    Li, Zhigang
    Guo, Qingyu
    Zhang, Jiaxin
    Fu, Zitong
    Wang, Yifei
    Wang, Tianzhen
    Tang, Jing
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [50] RNA-binding specificity of Y-box protein 1
    Dong, JinJiang
    Akcakanat, Argun
    Stivers, David N.
    Zhang, Jiexin
    Kim, Doyil
    Meric-Bernstam, Funda
    RNA BIOLOGY, 2009, 6 (01) : 59 - 64