HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing

被引：0
|
作者：
Erik Larsson
Per Lindahl
Petter Mostad
机构：
[1] Sahlgrenska University Hospital,Wallenberg Laboratory for Cardiovascular Research
[2] Chalmers University of Technology and Mathematical Sciences,Mathematical Sciences
[3] Göteborg University,undefined
来源：
BMC Bioinformatics | / 8卷
关键词：
Motif Discovery; Single Motif; Motif Pair; Background Sequence; Periodic Spacing;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] MProfiler: A Profile-Based Method for DNA Motif Discovery
    Altarawy, Doaa
    Ismail, Mohamed A.
    Ghanem, Sahar M.
    PATTERN RECOGNITION IN BIOINFORMATICS, PROCEEDINGS, 2009, 5780 : 13 - 23
  • [32] EFFICIENT DNA MOTIF DISCOVERY USING MODIFIED GENETIC ALGORITHM
    Al Daoud, Essam
    INTERNATIONAL JOURNAL OF COMPUTATIONAL INTELLIGENCE AND APPLICATIONS, 2013, 12 (03)
  • [33] iGAPK: Improved GAPK Algorithm for Regulatory DNA Motif Discovery
    Wang, Dianhui
    Li, Xi
    NEURAL INFORMATION PROCESSING: MODELS AND APPLICATIONS, PT II, 2010, 6444 : 217 - 225
  • [34] Comparing multiobjective swarm intelligence metaheuristics for DNA motif discovery
    Gonzalez-Alvarez, David L.
    Vega-Rodriguez, Miguel A.
    Gomez-Pulido, Juan A.
    Sanchez-Perez, Juan M.
    ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE, 2013, 26 (01) : 314 - 326
  • [35] Motif Discovery in Unaligned DNA Sequences Using Genetic Algorithm
    Muttakin, Al
    Huq, Mohammad Rezwanul
    2017 4TH INTERNATIONAL CONFERENCE ON ADVANCES IN ELECTRICAL ENGINEERING (ICAEE), 2017, : 725 - 730
  • [36] An Affinity Propagation-Based DNA Motif Discovery Algorithm
    Sun, Chunxiao
    Huo, Hongwei
    Yu, Qiang
    Guo, Haitao
    Sun, Zhigang
    BIOMED RESEARCH INTERNATIONAL, 2015, 2015
  • [37] Comparative Analysis of DNA Motif Discovery Algorithms: A Systemic Review
    Hashim, Fatma A.
    Mabrouk, Mai S.
    Atabany, Walid A. L.
    CURRENT CANCER THERAPY REVIEWS, 2019, 15 (01) : 4 - 26
  • [38] Probabilistic Models for Semisupervised Discriminative Motif Discovery in DNA Sequences
    Kim, Jong Kyoung
    Choi, Seungjin
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2011, 8 (05) : 1309 - 1317
  • [39] Fuzzy C-Means based DNA motif discovery
    Karabulut, Mustafa
    Ibrikci, Turgay
    ADVANCED INTELLIGENT COMPUTING THEORIES AND APPLICATIONS, PROCEEDINGS: WITH ASPECTS OF THEORETICAL AND METHODOLOGICAL ISSUES, 2008, 5226 : 189 - +
  • [40] A comparative benchmark of classic DNA motif discovery tools on synthetic data
    Castellana, Stefano
    Biagini, Tommaso
    Parca, Luca
    Petrizzelli, Francesco
    Bianco, Salvatore Daniele
    Vescovi, Angelo Luigi
    Carella, Massimo
    Mazza, Tommaso
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (06)
12345