HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing

被引：0
|
作者：
Erik Larsson
Per Lindahl
Petter Mostad
机构：
[1] Sahlgrenska University Hospital,Wallenberg Laboratory for Cardiovascular Research
[2] Chalmers University of Technology and Mathematical Sciences,Mathematical Sciences
[3] Göteborg University,undefined
来源：
BMC Bioinformatics | / 8卷
关键词：
Motif Discovery; Single Motif; Motif Pair; Background Sequence; Periodic Spacing;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Subtle motif discovery for detection of DNA regulatory sites
    Comin, Matteo
    PROCEEDINGS OF THE 5TH ASIA- PACIFIC BIOINFOMATICS CONFERENCE 2007, 2007, 5 : 27 - 36
  • [22] A uniform projection method for motif discovery in DNA sequences
    Raphael, B
    Liu, LT
    Varghese, G
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2004, 1 (02) : 91 - 94
  • [23] A Modified Algorithm for Variable Length DNA Motif Discovery
    Islam, S. M. Samiul
    Asger, Md Rashed
    Hasan, Md Abid
    Mottalib, M. Abdul
    2013 IEEE INTERNATIONAL CONFERENCE ON SMART INSTRUMENTATION, MEASUREMENT AND APPLICATIONS (ICSIMA 2013), 2013,
  • [24] Discovery of motif pairs from protein-protein interaction networks
    Zhang, Hong
    Xu, Yun
    Zhao, Yuzhong
    2009 INTERNATIONAL JOINT CONFERENCE ON BIOINFORMATICS, SYSTEMS BIOLOGY AND INTELLIGENT COMPUTING, PROCEEDINGS, 2009, : 293 - 296
  • [25] DNA motif discovery using chemical reaction optimization
    Saha, Sumit Kumar
    Islam, Md Rafiqul
    Hasan, Mredul
    EVOLUTIONARY INTELLIGENCE, 2021, 14 (04) : 1707 - 1726
  • [26] Multiobjective optimization algorithms for motif discovery in DNA sequences
    David L. González-Álvarez
    Miguel A. Vega-Rodríguez
    Álvaro Rubio-Largo
    Genetic Programming and Evolvable Machines, 2015, 16 : 167 - 209
  • [27] BEAM web server: a tool for structural RNA motif discovery
    Pietrosanto, Marco
    Adinolfi, Marta
    Casula, Riccardo
    Ausiello, Gabriele
    Ferre, Fabrizio
    Helmer-Citterich, Manuela
    BIOINFORMATICS, 2018, 34 (06) : 1058 - 1060
  • [28] PriorsEditor: a tool for the creation and use of positional priors in motif discovery
    Klepper, Kjetil
    Drablos, Finn
    BIOINFORMATICS, 2010, 26 (17) : 2195 - 2197
  • [29] RPPMD (Randomly Projected Possible Motif Discovery): An Efficient Bucketing Method for Finding DNA Planted Motif
    Bin Ashraf, Faisal
    Abir, Ali Imam
    Salekin, Md Sirajus
    Mottalib, M. A.
    2017 INTERNATIONAL CONFERENCE ON ELECTRICAL, COMPUTER AND COMMUNICATION ENGINEERING (ECCE), 2017, : 509 - 513
  • [30] Generic Spaced DNA Motif Discovery Using Genetic Algorithm
    Chan, Tak-Ming
    Leung, Kwong-Sak
    Lee, Kin-Hong
    Lio, Pietro
    2010 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION (CEC), 2010,
12345