AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences

被引：0
|
作者：
Darío Guerrero
Rocío Bautista
David P Villalobos
Francisco R Cantón
M Gonzalo Claros
机构：
[1] Severo Ochoa 34,Plataforma Andaluza de Bioinformática (Universidad de Málaga)
[2] Campus de Teatinos,Departamento de Biología Molecular y Bioquímica (Universidad de Málaga)
来源：
Algorithms for Molecular Biology | / 5卷
关键词：
Execution Time; Malate Dehydrogenase; Average Nucleotide Identity; Putative SNPs; Divergent Region;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences
    Guerrero, Dario
    Bautista, Rocio
    Villalobos, David P.
    Canton, Francisco R.
    Gonzalo Claros, M.
    ALGORITHMS FOR MOLECULAR BIOLOGY, 2010, 5
  • [2] CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences
    Hindemitt, T
    Mayer, KFX
    BIOINFORMATICS, 2005, 21 (23) : 4304 - 4306
  • [3] Refining multiple sequence alignments with conserved core regions
    Chakrabarti, Saikat
    Lanczycki, Christopher J.
    Panchenko, Anna R.
    Przytycka, Teresa M.
    Thiessen, Paul A.
    Bryant, Stephen H.
    NUCLEIC ACIDS RESEARCH, 2006, 34 (09) : 2598 - 2606
  • [4] NX4: a web-based visualization of large multiple sequence alignments
    Solano-Roman, A.
    Cruz-Castillo, C.
    Offenhuber, D.
    Colubri, A.
    BIOINFORMATICS, 2019, 35 (22) : 4800 - 4802
  • [5] SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments
    Ajawatanawong, Pravech
    Atkinson, Gemma C.
    Watson-Haigh, Nathan S.
    MacKenzie, Bryony
    Baldauf, Sandra L.
    NUCLEIC ACIDS RESEARCH, 2012, 40 (W1) : W340 - W347
  • [6] Searching databases of conserved sequence regions by aligning protein multiple-alignments
    Pietrokovski, S
    NUCLEIC ACIDS RESEARCH, 1996, 24 (19) : 3836 - 3845
  • [7] Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions
    Stojanovic, N
    Florea, L
    Riemer, C
    Gumucio, D
    Slightom, J
    Goodman, M
    Miller, W
    Hardison, R
    NUCLEIC ACIDS RESEARCH, 1999, 27 (19) : 3899 - 3910
  • [8] DivA: Detection of non-homologous and very divergent regions in protein sequence alignments
    Mendoza M.L.Z.
    Nygaard S.
    Da Fonseca R.R.
    BMC Research Notes, 7 (1)
  • [9] GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences
    Sato, Tetsuya
    Suyama, Mikita
    BIOINFORMATICS, 2015, 31 (08) : 1293 - 1295
  • [10] A Web-Based Tool for Automatic Detection and Visualization of DNA Differentially Methylated Regions
    Fernandez, Lisardo
    Olanda, Ricardo
    Perez, Mariano
    Orduna, Juan M.
    ELECTRONICS, 2021, 10 (09)
12345