High quality draft genome sequence of Janthinobacterium psychrotolerans sp. nov., isolated from a frozen freshwater pond

被引:0
作者
Xianzhe Gong
Stig Skrivergaard
Benjamin Smed Korsgaard
Lars Schreiber
Ian P. G. Marshall
Kai Finster
Andreas Schramm
机构
[1] Aarhus University,Section for Microbiology, Department of Bioscience
[2] Aarhus University,Center for Geomicrobiology, Department of Bioscience
[3] Aarhus University,Stellar Astrophysics Center, Department of Physics and Astronomy
来源
Standards in Genomic Sciences | / 12卷
关键词
Freshwater sediment; Low temperature; Denitrification; Fermentation;
D O I
暂无
中图分类号
学科分类号
摘要
Strain S3-2T, isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2T is a facultative anaerobe that lacks the ability to produce violacein but shows antibiotic resistance, psychrotolerance, incomplete denitrification, and fermentation. The draft genome of strain S3-2T has a size of ~5.8 Mbp and contains 5,297 genes, including 115 RNA genes. Based on the phenotypic properties of the strain, the low in silico DNA-DNA hybridization (DDH) values with related genomes (<35%), and the low whole genome-based average nucleotide identity (ANI) (<86%) with other strains within the genus Janthinobacterium, we propose that strain S3-2T is the type strain (= DSM 102223 = LMG 29653) of a new species within this genus. We propose the name Janthinobacterium psychrotolerans sp. nov. to emphasize the capability of the strain to grow at low temperatures.
引用
收藏
相关论文
共 136 条
[1]  
Hornung C(2013)The PLoS One 8 e55045-33
[2]  
Poehlein A(2007) sp. HH01 genome encodes a homologue of the Biochem 48 127-24
[3]  
Haack FS(2009) CqsA and ISME J. 3 818-33
[4]  
Schmidt M(2007) LqsA autoinducer synthases J. Bacteriol. 189 5626-41
[5]  
Dierking K(2010)Violacein: properties and biological activities. Biotechnol. Appl DNA Cell Biol. 29 533-48
[6]  
Durán N(2001)Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus Sensors Actuators B Chem. 81 42-9
[7]  
Justo GZ(2007)Gene cloning and characterization of the very large NAD-dependent l-glutamate dehydrogenase from the psychrophile J Appl Microbiol. 102 992-1589
[8]  
Ferreira CV(1999), isolated from cold soil J Syst Bacteriol 49 1577-20
[9]  
Melo PS(2014)Psychrotrophic strain of Bioinformatics 30 2114-77
[10]  
Cordi L(2012) from a cold Alaskan soil produces prodigiosin J Comput Biol. 19 455-964