Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data

被引:0
作者
H. Beiki
H. Liu
J. Huang
N. Manchanda
D. Nonneman
T. P. L. Smith
J. M. Reecy
C. K. Tuggle
机构
[1] Iowa State University,Department of Animal Science
[2] Jiangxi Agricultural University,College of Animal Science and Technology
[3] Iowa State University,Department of Ecology, Evolution, and Organismal Biology
[4] USDA,undefined
[5] ARS,undefined
[6] U.S. Meat Animal Research Center,undefined
来源
BMC Genomics | / 20卷
关键词
Porcine; Transcriptome sequencing; PacBio; Iso-seq; Single molecule long read sequencing; RNA-seq; Genome annotation;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 362 条
  • [1] Meurens F(2012)The pig: a model for human infectious diseases Trends Microbiol 20 50-57
  • [2] Summerfield A(2007)A high utility integrated map of the pig genome Genome Biol 8 R139-2898
  • [3] Nauwynck H(2017)Annotation of the domestic pig genome by quantitative Proteogenomics J Proteome Res 16 2887-d761
  • [4] Saif L(2018)Ensembl 2018 Nucleic Acids Res 46 D754-398
  • [5] Gerdts V(2012)Analyses of pig genomes provide insight into porcine demography and evolution Nature 491 393-1776
  • [6] Humphray SJ(2011)What fraction of the human genome is functional? Genome Res 21 1769-6138
  • [7] Scott CE(2014)Defining functional DNA elements in the human genome Proc Natl Acad Sci U S A 111 6131-412
  • [8] Clark R(2015)Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression Brief Bioinform 16 393-9367
  • [9] Marron B(2009)Potential etiologic and functional implications of genome-wide association loci for human diseases and traits Proc Natl Acad Sci U S A 106 9362-D1054
  • [10] Bender C(2012)GWASdb: a database for human genetic variants identified by genome-wide association studies Nucleic Acids Res 40 D1047-3011