scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data

被引:0
|
作者
Isar Nassiri
Benjamin Fairfax
Angela Lee
Yanxia Wu
David Buck
Paolo Piazza
机构
[1] Wellcome Centre for Human Genetics,Oxford Genomics Centre, Nuffield Department of Medicine
[2] University of Oxford,Department of Oncology
[3] MRC–Weatherall Institute of Molecular Medicine,undefined
[4] University of Oxford,undefined
[5] University of Oxford & Oxford Cancer Centre,undefined
[6] Churchill Hospital,undefined
[7] Oxford University Hospitals NHS Foundation Trust,undefined
来源
BMC Genomics | / 24卷
关键词
Single cell RNA sequencing; Transcriptomics; Genomics; Cell type annotation;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data
    Nassiri, Isar
    Fairfax, Benjamin
    Lee, Angela
    Wu, Yanxia
    Buck, David
    Piazza, Paolo
    BMC GENOMICS, 2023, 24 (01)
  • [2] Single-cell Mayo Map (scMayoMap): an easy-to-use tool for cell type annotation in single-cell RNA-sequencing data analysis
    Lu Yang
    Yan Er Ng
    Haipeng Sun
    Ying Li
    Lucas C. S. Chini
    Nathan K. LeBrasseur
    Jun Chen
    Xu Zhang
    BMC Biology, 21
  • [3] Single-cell Mayo Map (scMayoMap): an easy-to-use tool for cell type annotation in single-cell RNA-sequencing data analysis
    Yang, Lu
    Ng, Yan Er
    Sun, Haipeng
    Li, Ying
    Chini, Lucas C. S.
    Lebrasseur, Nathan K.
    Chen, Jun
    Zhang, Xu
    BMC BIOLOGY, 2023, 21 (01)
  • [4] Missing data and technical variability in single-cell RNA-sequencing experiments
    Hicks, Stephanie C.
    Townes, F. William
    Teng, Mingxiang
    Irizarry, Rafael A.
    BIOSTATISTICS, 2018, 19 (04) : 562 - 578
  • [5] Single-cell RNA-sequencing of the brain
    Duran, Raquel Cuevas-Diaz
    Wei, Haichao
    Wu, Jia Qian
    CLINICAL AND TRANSLATIONAL MEDICINE, 2017, 6
  • [6] scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data
    Dharmaratne, Malindrie
    Kulkarni, Ameya S.
    Fard, Atefeh Taherian
    Mar, Jessica C.
    GIGASCIENCE, 2023, 12
  • [7] Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling
    Saptarshi Bej
    Anne-Marie Galow
    Robert David
    Markus Wolfien
    Olaf Wolkenhauer
    BMC Bioinformatics, 22
  • [8] Automated annotation of rare-cell types from single-cell RNA-sequencing data through synthetic oversampling
    Bej, Saptarshi
    Galow, Anne-Marie
    David, Robert
    Wolfien, Markus
    Wolkenhauer, Olaf
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [9] scds: computational annotation of doublets in single-cell RNA sequencing data
    Bais, Abha S.
    Kostka, Dennis
    BIOINFORMATICS, 2020, 36 (04) : 1150 - 1158
  • [10] Comparison of Computational Methods for Imputing Single-Cell RNA-Sequencing Data
    Zhang, Lihua
    Zhang, Shihua
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 17 (02) : 376 - 389