A biocompatible surfactant-n-dodecylammonium α-glutamate (GDA) with biodegradable and biocompatible properties was synthesized, and the phase behavior and the structural properties of GDA/n-pentanol/water system was studied by small-angle X-ray diffraction, electron spin resonance, and freeze-fracture transmission electron microscopy (FF-TEM). In the ternary phase diagram of GDA/n-pentanol/water system, there exist three isotropic regions—O/W, bicontinuous, and W/O structures, and two anisotropic regions—hexagonal liquid crystal (HEX), and lamellar liquid crystal (LLC) regions. UV irradiation causes the decrease in the interlayer space, d, of lamellar liquid crystal and in the radius, r, of column aggregates of hexagonal liquid crystal, but it has little effect on the structure of O/W and W/O microemulsions.