Biocomputational prediction of small non-coding RNAs in Streptomyces

[1] Vogel J(2005)How to find small non-coding RNAs in bacteria Biol Chem 386 1219-1238

[2] Sharma CM(2006)Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 Nucleic Acids Res 34 3484-3493

[3] Livny J(2000)6S RNA regulates E. coli RNA polymerase activity Cell 101 613-623

[4] Brencic A(2008)SsrA genes of streptomycetes and association of proteins to the tmRNA during development and cellular differentiation Proteomics 8 1429-41

[5] Lory S(1999)Small RNAs in Escherichia coli Trends Microbiol 7 37-45

[6] Waldor MK(2003)RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria Nucleic Acids Res 31 6435-6443

[7] Wassarman KM(2005)Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli Nucleic Acids Res 33 1040-1050

[8] Storz G(2002)Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis Bioinformatics 18 Suppl 1 S337-44

[9] Mikulik K(2003)Global analysis of small RNA and mRNA targets of Hfq Mol Microbiol 50 1111-1124

[10] Paleckova P(2001)Novel small RNA-encoding genes in the intergenic regions of Escherichia coli Curr Biol 11 941-950

[1] Vogel J(2005)How to find small non-coding RNAs in bacteria Biol Chem 386 1219-1238

[2] Sharma CM(2006)Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 Nucleic Acids Res 34 3484-3493

[3] Livny J(2000)6S RNA regulates E. coli RNA polymerase activity Cell 101 613-623

[4] Brencic A(2008)SsrA genes of streptomycetes and association of proteins to the tmRNA during development and cellular differentiation Proteomics 8 1429-41

[5] Lory S(1999)Small RNAs in Escherichia coli Trends Microbiol 7 37-45

[6] Waldor MK(2003)RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria Nucleic Acids Res 31 6435-6443

[7] Wassarman KM(2005)Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli Nucleic Acids Res 33 1040-1050

[8] Storz G(2002)Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis Bioinformatics 18 Suppl 1 S337-44

[9] Mikulik K(2003)Global analysis of small RNA and mRNA targets of Hfq Mol Microbiol 50 1111-1124

[10] Paleckova P(2001)Novel small RNA-encoding genes in the intergenic regions of Escherichia coli Curr Biol 11 941-950