The CUT&RUN suspect list of problematic regions of the genome

被引：0
|
作者：
Anna Nordin
Gianluca Zambanini
Pierfrancesco Pagella
Claudio Cantù
机构：
[1] Linköping University,Wallenberg Centre for Molecular Medicine
[2] Linköping University,Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology, Faculty of Medicine and Health Sciences
来源：
Genome Biology | / 24卷
关键词：
CUT&RUN; Chromatin; Bioinformatics; Peak calling; Blacklist; Suspect list;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 10 条
  • [1] The CUT&RUN suspect list of problematic regions of the genome
    Nordin, Anna
    Zambanini, Gianluca
    Pagella, Pierfrancesco
    Cantu, Claudio
    GENOME BIOLOGY, 2023, 24 (01)
  • [2] CUT&RUN for Chromatin Profiling in Caenorhabditis elegans
    Emerson, Felicity J.
    Lee, Siu Sylvia
    CURRENT PROTOCOLS, 2022, 2 (06):
  • [3] Adaptation of CUT&RUN for use in African trypanosomes
    Miller, Geneva
    Rollosson, Lindsey M.
    Saada, Carrie
    Wade, Serenity J.
    Schulz, Danae
    PLOS ONE, 2023, 18 (11):
  • [4] CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis
    Zhu, Qian
    Liu, Nan
    Orkin, Stuart H.
    Yuan, Guo-Cheng
    GENOME BIOLOGY, 2019, 20 (01)
  • [5] Identification of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&Tag
    Akdogan-Ozdilek, Bagdeser
    Duval, Katherine L.
    Meng, Fanju W.
    Murphy, Patrick J.
    Goll, Mary G.
    DEVELOPMENTAL DYNAMICS, 2022, 251 (04) : 729 - 742
  • [6] Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling
    Michael P. Meers
    Dan Tenenbaum
    Steven Henikoff
    Epigenetics & Chromatin, 12
  • [7] Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling
    Meers, Michael P.
    Tenenbaum, Dan
    Henikoff, Steven
    EPIGENETICS & CHROMATIN, 2019, 12 (1)
  • [8] A tissue dissociation method for ATAC-seq and CUT&RUN in Drosophila pupal tissues
    Buchert, Elli M.
    Fogarty, Elizabeth A.
    Uyehara, Christopher M.
    McKay, Daniel J.
    Buttitta, Laura A.
    FLY, 2023, 17 (01)
  • [9] Single-nucleus CUT&RUN elucidates the function of intrinsic and genomics-driven epigenetic heterogeneity in head and neck cancer progression
    Womersley, Howard J.
    Muliaditan, Daniel
    Dasgupta, Ramanuj
    Cheow, Lih Feng
    GENOME RESEARCH, 2025, 35 (01) : 162 - 177
  • [10] A new CUT&RUN low volume-urea (LoV-U) protocol optimized for transcriptional co-factors uncovers Wnt/β-catenin tissue-specific genomic targets
    Zambanini, Gianluca
    Nordin, Anna
    Jonasson, Mattias
    Pagella, Pierfrancesco
    Cantu, Claudio
    DEVELOPMENT, 2022, 149 (23):
1