Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology

[1] Ito T(2001)A comprehensive two-hybrid analysis to explore the yeast protein interactome Proc. Nat. Acad. Sci 98 4569-4574

[2] Chiba T(2008)Extracting interactions between proteins from the literature Journal of biomedical informatics 41 393-407

[3] Ozawa R(2004)Defining and identifying communities in networks PNAS 101 2658-2663

[4] Yoshida M(2006)Graph-based methods for analysing networks in cell biology Brief bioinform 7 243-255

[5] Hattori M(2002)An efficient algorithm for large-scale detection of protein families Nucleic acids res 30 1575-1584

[6] Sakaki Y(2004)Protein complex prediction via cost-based clustering Bioinformatics 20 3013-3020

[7] Zhou D(2004)Finding and evaluating community structure in networks Physical Review E 69 1-15

[8] He Y(2004)Detection of functional modules from protein interaction networks Proteins 54 49-57

[9] Radicchi F(2005)Local modeling of global interactome networks Bioinformatics 21 3548-3557

[10] Castellano C(2006)CFinder: locating cliques and overlapping protein interaction networks Bioinformatics 22 1021-1023

[1] Ito T(2001)A comprehensive two-hybrid analysis to explore the yeast protein interactome Proc. Nat. Acad. Sci 98 4569-4574

[2] Chiba T(2008)Extracting interactions between proteins from the literature Journal of biomedical informatics 41 393-407

[3] Ozawa R(2004)Defining and identifying communities in networks PNAS 101 2658-2663

[4] Yoshida M(2006)Graph-based methods for analysing networks in cell biology Brief bioinform 7 243-255

[5] Hattori M(2002)An efficient algorithm for large-scale detection of protein families Nucleic acids res 30 1575-1584

[6] Sakaki Y(2004)Protein complex prediction via cost-based clustering Bioinformatics 20 3013-3020

[7] Zhou D(2004)Finding and evaluating community structure in networks Physical Review E 69 1-15

[8] He Y(2004)Detection of functional modules from protein interaction networks Proteins 54 49-57

[9] Radicchi F(2005)Local modeling of global interactome networks Bioinformatics 21 3548-3557

[10] Castellano C(2006)CFinder: locating cliques and overlapping protein interaction networks Bioinformatics 22 1021-1023