Hydration of β-cyclodextrin: A molecular dynamics simulation study

被引:0
|
作者
R.G. Winkler
S. Fioravanti
G. Ciccotti
C. Margheritis
M. Villa
机构
[1] Universität Ulm,Abteilung Theoretische Physik
[2] Università `La Sapienza',INFM
[3] INFM di Pavia,Dipartimento di Fisica
来源
Journal of Computer-Aided Molecular Design | 2000年 / 14卷
关键词
β-cyclodextrin; hydration; hydrophobicity; molecular dynamics simulation;
D O I
暂无
中图分类号
学科分类号
摘要
We study by molecular dynamics simulations the hydration of β-cyclodextrin. Our simulations show that within these barrel-shaped molecules hydrophobicity dominates, while at the top and bottom sides of the barrel interactions with water are mostly hydrophilic in nature. These results agree with crystallographic data at 120 K and, in particular, with the spontaneous hydration process of a cyclodextrin crystal in wet atmosphere. The predicted structure of the hydration shells is discussed and compared with previous molecular mechanics calculations which report an overall hydrophobic behavior. Moreover, the temperature dependence of the hydration process is discussed.
引用
收藏
页码:659 / 667
页数:8
相关论文
共 50 条
  • [31] Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: Conformation and hydration
    Duan, Y
    Wilkosz, P
    Crowley, M
    Rosenberg, JM
    JOURNAL OF MOLECULAR BIOLOGY, 1997, 272 (04) : 553 - 572
  • [32] Hydration of Lanthanide Chloride Salts: A Quantum Chemical and Classical Molecular Dynamics Simulation Study
    Beuchat, Cesar
    Hagberg, Daniel
    Spezia, Riccardo
    Gagliardi, Laura
    JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (47): : 15590 - 15597
  • [33] Hydration Characteristics of Fullerene in Water: A Coarse-Grained Molecular Dynamics Simulation Study
    Handique, Akankshya
    Choudhury, Niharendu
    DAE SOLID STATE PHYSICS SYMPOSIUM 2019, 2020, 2265
  • [34] A molecular dynamics study of cyclodextrin nanosponge models
    Raffaini, Giuseppina
    Ganazzoli, Fabio
    Mele, Andrea
    Castiglione, Franca
    JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2013, 75 (3-4) : 263 - 268
  • [35] A molecular dynamics study of cyclodextrin nanosponge models
    Giuseppina Raffaini
    Fabio Ganazzoli
    Andrea Mele
    Franca Castiglione
    Journal of Inclusion Phenomena and Macrocyclic Chemistry, 2013, 75 : 263 - 268
  • [36] HYDRATION OF Cd(II): MOLECULAR DYNAMICS STUDY
    Mohammed, Ahmed M.
    BULLETIN OF THE CHEMICAL SOCIETY OF ETHIOPIA, 2008, 22 (03) : 423 - 432
  • [37] A molecular dynamics study of hydration of tetramethyl urea
    Rodnikova, MN
    Tovchigrechko, AD
    FrankKamenetskii, MM
    ZHURNAL FIZICHESKOI KHIMII, 1996, 70 (08): : 1443 - 1447
  • [38] Dielectric study on molecular dynamics in cement hydration
    Abe, Y.
    Asano, M.
    Kita, R.
    Shinyashiki, N.
    Yagihara, S.
    TRANSACTIONS OF THE MATERIALS RESEARCH SOCIETY OF JAPAN, VOL 33, NO 2, 2008, 33 (02): : 447 - 450
  • [39] A Molecular Dynamics Study of Hydration of Urea and Tetramethylurea
    Tovchigrechko, A. D.
    Rodnikova, M. N.
    Russian Journal of Physical Chemistry, 72 (04):
  • [40] Molecular dynamics study of hydration of the protein interior
    Damjanovic, A
    García-Moreno, B
    Lattman, EE
    García, AE
    COMPUTER PHYSICS COMMUNICATIONS, 2005, 169 (1-3) : 126 - 129