SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictions

被引:0
作者
Sierra S. Nishizaki
Alan P. Boyle
机构
[1] University of Michigan,Department of Human Genetics
[2] University of Michigan,Department of Computational Medicine and Bioinformatics
来源
BMC Bioinformatics | / 23卷
关键词
DNA methylation; Transcription factor; TFBS; Gene regulation; Noncoding variation; Software; Open-source;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 241 条
[1]  
Bird AP(1986)CpG-rich islands and the function of DNA methylation Nature 321 209-213
[2]  
Tate PH(1993)Effects of DNA methylation on DNA-binding proteins and gene expression Curr Opin Genet Dev 3 226-231
[3]  
Bird AP(2017)Impact of cytosine methylation on DNA binding specificities of human transcription factors Science 356 eaaj2239-1195
[4]  
Yin Y(2015)Role of DNA Methylation in Modulating Transcription Factor Occupancy Cell Rep 12 1184-610
[5]  
Morgunova E(2005)DNA methylation and human disease Nat Rev Genet 6 597-888
[6]  
Jolma A(2010)Histone modifications, DNA methylation, and schizophrenia Neurosci Biobehav Rev 34 882-10
[7]  
Kaasinen E(2004)A mixed epigenetic/genetic model for oligogenic inheritance of autism with a limited role for UBE3A Am J Med Genet A 131 1-997
[8]  
Sahu B(2013)DNA methylation presents distinct binding sites for human transcription factors Elife 2 e00726-6210
[9]  
Khund-Sayeed S(2013)CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo Genome Res 23 988-565
[10]  
Das PK(2017)The Epstein-Barr Virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-Methylcytosine and 5-hydroxymethylcytosine Biochemistry 56 6200-2395