Microbiome function predicts amphibian chytridiomycosis disease dynamics

Wong ML(2003)Evaluation of methods for the extraction and purification of DNA from the human microbiome Genome Res 13 2498-20

Fogel N(2021)Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq illumina sequencing platform ISME J 15 1628-1073

Knowlton KC(2015)DADA2: high-resolution sample inference from Illumina amplicon data Proc R Soc B 282 20142881-678

King Y(2018)Rapid quantitative detection of chytridiomycosis ( Proc R Soc B 285 20180758-848

Lai S(2016)) in amphibian samples using real-time Taqman PCR assay ISME J 10 1682-3599

Naik C(2015)The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Ecology 96 595-undefined

Chehoud JA(2000)Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies Emerg Infect Dis 6 196-undefined

Sanford L(2011)zCompositions — R package for multivariate imputation of left-censored data under a compositional approach Biosci Biotechnol Biochem 75 2008-undefined

Kalan P(2019)mixOmics: an R package for ‘omics’ feature selection and multiple data integration Infect Immun 87 e00035-undefined

Meylan AJ(2011)Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems PLoS Pathog 7 e1002338-undefined

Wong ML(2003)Evaluation of methods for the extraction and purification of DNA from the human microbiome Genome Res 13 2498-20

Fogel N(2021)Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq illumina sequencing platform ISME J 15 1628-1073

Knowlton KC(2015)DADA2: high-resolution sample inference from Illumina amplicon data Proc R Soc B 282 20142881-678

King Y(2018)Rapid quantitative detection of chytridiomycosis ( Proc R Soc B 285 20180758-848

Lai S(2016)) in amphibian samples using real-time Taqman PCR assay ISME J 10 1682-3599

Naik C(2015)The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Ecology 96 595-undefined

Chehoud JA(2000)Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies Emerg Infect Dis 6 196-undefined

Sanford L(2011)zCompositions — R package for multivariate imputation of left-censored data under a compositional approach Biosci Biotechnol Biochem 75 2008-undefined

Kalan P(2019)mixOmics: an R package for ‘omics’ feature selection and multiple data integration Infect Immun 87 e00035-undefined

Meylan AJ(2011)Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems PLoS Pathog 7 e1002338-undefined