Data Deposition and Annotation at the Worldwide Protein Data Bank

被引：0
作者：
Shuchismita Dutta
Kyle Burkhardt
Jasmine Young
Ganesh J. Swaminathan
Takanori Matsuura
Kim Henrick
Haruki Nakamura
Helen M. Berman
机构：
[1] Rutgers,Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology
[2] The State University of New Jersey,Office of Research and Project Administration
[3] Princeton University,The Macromolecular Structure Database at the European Bioinformatics Institute PDB
[4] EMBL Outstation-Hinxton,e
[5] Osaka University,Protein Data Bank Japan (PDBj), Institute for Protein Research
来源：
Molecular Biotechnology | 2009年 / 42卷
关键词：
Protein Data Bank (PDB); wwPDB; Deposition; Annotation; Validation;
D O I：
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中图分类号：
学科分类号：
摘要：
The Protein Data Bank (PDB) is the repository for three-dimensional structures of biological macromolecules, determined by experimental methods. The data in the archive is free and easily available via the Internet from any of the worldwide centers managing this global archive. These data are used by scientists, researchers, bioinformatics specialists, educators, students, and general audiences to understand biological phenomenon at a molecular level. Analysis of this structural data also inspires and facilitates new discoveries in science. This chapter describes the tools and methods currently used for deposition, processing, and release of data in the PDB. References to future enhancements are also included.
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页码：1 / 13
页数：12
相关论文
共 257 条
[1]  
Bernstein FC(1977)Protein Data Bank: A computer-based archival file for macromolecular structures Journal of Molecular Biology 112 535-542
[2]  
Koetzle TF(2000)The Protein Data Bank Nucleic Acids Research 28 235-242
[3]  
Williams GJB(2003)Announcing the worldwide Protein Data Bank Nature Structural Biology 10 980-D303
[4]  
Meyer EF(2007)The Worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data Nucleic Acids Research 35 D301-37
[5]  
Brice MD(1989)Creation of a nuclear magnetic resonance data repository and literature database Protein Sequences & Data Analysis 2 23-D237
[6]  
Rodgers JR(2005)The RCSB Protein Data Bank: A redesigned query system and relational database based on the mmCIF schema Nucleic Acids Research 33 D233-D305
[7]  
Kennard O(2006)The RCSB PDB information portal for structural genomics Nucleic Acids Research 34 D302-D290
[8]  
Shimanouchi T(2006)E-MSD: Improving data deposition and structure quality Nucleic Acids Research 34 D287-361
[9]  
Tasumi M(1998)PQS: A protein quarternary file server Trends in Biochemical Sciences 23 358-1330
[10]  
Berman HM(2004)eF-site and PDBjViewer: Database and viewer for protein functional sites Bioinformatics (Oxford, England) 20 1329-2043
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