Chromosome-level genome assembly of the Asian spongy moths Lymantria dispar asiatica

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作者
Zhe Xu
Jianyang Bai
Yue Zhang
Lu Li
Mengru Min
Jingyu Cao
Jingxin Cao
Yanchun Xu
Fei Li
Ling Ma
机构
[1] Northeast Forestry University,College of Wildlife and Protected Area
[2] Northeast Forestry University,Department of Forest Protection, College of Forestry
[3] Zhejiang University,State Key Laboratory of Rice Biology & Ministry of Agriculture and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, College of Agriculture and Biotechnology
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Scientific Data | / 10卷
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摘要
The Asian spongy moth, Lymantria dispar asiatica, is one of the most devastating forestry defoliators. The absence of a high-quality genome limited the understanding of its adaptive evolution. Here, we conducted the first chromosome-level genome assembly of L. dispar asiatica using PacBio HIFI long reads, Hi-C sequencing reads and transcriptomic data. The total assembly size is 997.59 Mb, containing 32 chromosomes with a GC content of 38.91% and a scaffold N50 length of 35.42 Mb. The BUSCO assessment indicated a completeness estimate of 99.4% for this assembly. A total of 19,532 protein-coding genes was predicted. Our study provides a valuable genomics resource for studying the mechanisms of adaptive evolution and facilitate an efficient control of L. dispar asiatica.
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  • [1] Srivastava V(2020)Assessing the Potential Distribution of Asian Gypsy Moth in Canada: A Comparison of Two Methodological Approaches Sci Rep 10 1559-1566
  • [2] Griess VC(2015)Defoliation by gypsy moths negatively affects the production of acorns by two Japanese oak species Trees 29 459-468
  • [3] Keena MA(2014)The cost of gypsy moth sex in the city Urban For Urban Gree 13 903-910
  • [4] Nakajima T(2019)A Phenology Model for Asian Gypsy Moth Egg Hatch Environ Entomol 48 2206-2223
  • [5] Haruki S(2019)Evolutionary genomics of gypsy moth populations sampled along a latitudinal gradient Mol Ecol 28 366-374
  • [6] Bigsby KM(2016)DNA Barcoding of Gypsy Moths From China (Lepidoptera: Erebidae) Reveals New Haplotypes and Divergence Patterns Within Gypsy Moth Subspecies J Econ Entomol 109 235-242
  • [7] Ambrose MJ(2019)Underestimated mitochondrial diversity in gypsy moth Lymantria dispar from Asia Agr Forest Entomol 21 195-210
  • [8] Tobin PC(2012)The ecology, geopolitics, and economics of managing Lymantria dispar in the United States Int J Pest Manage 58 449-457
  • [9] Sills EO(2020)Molecular characterization and functional analysis of USP-1 by RNA interference in the Asian gypsy moth Lymantria dispar J Forestry Res v.31 43-52
  • [10] Gray D(2017)Cap n collar transcription factor regulates multiple genes coding for proteins involved in insecticide detoxification in the red flour beetle, Tribolium castaneum Insect Biochem Mol Biol 90 4073-4083