Association of tomato leaf curl Sudan virus with leaf curl disease of tomato in Jeddah, Saudi Arabia

被引:4
作者
Sohrab S.S. [1 ]
Yasir M. [1 ]
El-Kafrawy S.A. [1 ]
Abbas A.T. [1 ]
Mousa M.A.A. [2 ,3 ]
Bakhashwain A.A. [2 ]
机构
[1] Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Post Box No. 80216, Jeddah
[2] Faculty of Metrology and Arid Land Agriculture, King Abdulaziz University, Jeddah
[3] Department of Horticulture, Assiut University, Assiut
关键词
Begomovirus; Betasatellite; Saudi Arabia; Tomato leaf curl disease; Tomato leaf curl Sudan virus;
D O I
10.1007/s13337-016-0308-x
中图分类号
学科分类号
摘要
Tomato is an important vegetable crop and its production is adversely affected by leaf curl disease caused by begomovirus. Leaf curl disease is a serious concern for tomato crops caused by begomovirus in Jeddah, Kingdom of Saudi Arabia. Tomato leaf curl disease has been shown to be mainly caused either by tomato leaf curl Sudan virus or tomato yellow leaf curl virus as well as tomato leaf curl Oman virus. Many tomato plants infected with monopartite begomoviruses were also found to harbor a symptom enhancing betasatellites. Here we report the association of tomato leaf curl Sudan virus causing leaf curl disease of tomato in Jeddah, Kingdom of Saudi Arabia. The complete genome sequence analysis showed highest (99.9 %) identity with tomato leaf curl Sudan virus causing leaf curl disease in Arabian Peninsula. In phylogenetic relationships analysis, the identified virus formed closest cluster with tomato leaf curl Sudan virus. In recombination analysis study, the major parent was identified as tomato leaf curl Sudan virus. Findings of this study strongly supports the associated virus is a variant of tomato leaf curl Sudan virus causing disease in Sudan, Yemen and Arabian Peninsula. The betasatellites sequence analysis showed highest identity (99.8 %) with tomato leaf curl betasatellites-Amaranthus-Jeddah. The phylogenetic analysis result based on betasatellites formed closed cluster with tomato yellow leaf curl Oman betasatellites. The importance of these findings and occurrence of begomovirus in new geographic regions causing leaf curl disease of tomato in Jeddah, Kingdom of Saudi Arabia are discussed. © 2016, Indian Virological Society.
引用
收藏
页码:145 / 153
页数:8
相关论文
共 30 条
[1]  
Ajlan A.M., Ghanem G.A.M., Abdulsalam K.S., Tomato yellow leaf curl virus (TYLCV) in Saudi Arabia: identification, partial characterization and virus–vector relationship, Arab J Biotech, 10, pp. 179-192, (2007)
[2]  
Akhtar S., Khan A.J., Singh A.K., Briddon R.W., Identification of a disease complex involving a novel monopartite begomovirus with beta-and alpha satellites associated with okra leaf curl disease in Oman, Arch Virol, 159, pp. 1199-1205, (2014)
[3]  
Al-Saleh M.A., Al-Shahwan I.M., Brown J.K., Idris A.M., Molecular characterization of a naturally occurring interspecific recombinant begomovirus with close relatives widespread in southern Arabia, Virol J, 11, (2014)
[4]  
Briddon R.W., Mansoor S., Bedford I.D., Pinner M.S., Saunders K., Stanley J., Zafar Y., Malik K.A., Markham P.G., Identification of DNA components required for induction of cotton leaf curl disease, Virology, 285, pp. 234-243, (2001)
[5]  
Briddon R.W., Bull S.E., Mansoor S., Amin I., Markham P.G., Universal primers for the PCR-mediated amplification of DNA b, a molecule associated with some monopartite begomoviruses, Mol Biotech, 20, pp. 315-318, (2002)
[6]  
Briddon R.W., Bull S.E., Amin I., Idris A.M., Mansoor S., Bedford I.D., Dhawan P., Rishi N., Siwatch S.S., Abdel-Salam A.M., Diversity of DNA β: a satellite molecule associated with some monopartite begomoviruses, Virology, 312, pp. 106-121, (2003)
[7]  
Brown J.K., Zerbini F.M., Castillo J.N., Moriones E., Sobrinho R.R., Silva J.C.F., Olive E.F., Briddon R.W., Zepeda C.H.N., Idris A., Malathi V.G., Martin D.P., Bustamante R.R., Ueda S., Varsani A., Revision of begomovirus taxonomy based on pairwise sequence comparisons, Arch Virol, 60, pp. 1593-1619, (2015)
[8]  
Duffy S., Holmes E.C., Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus, J Virol, 82, pp. 957-965, (2008)
[9]  
New species and revised taxonomy proposal for the genus Begomovirus (Geminiviridae): phylogenetic and pairwise distance analysis using the same approach as implemented for the genera Mastrevirus and Curtovirus in the same family, (2014)
[10]  
Hall T.A., BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symp Ser, 41, pp. 95-98, (1999)