Non-Ewald methods for evaluating the electrostatic interactions of charge systems: similarity and difference

被引:0
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作者
Ikuo Fukuda
Haruki Nakamura
机构
[1] University of Hyogo,Graduate School of Information Science
[2] Osaka University,Institute for Protein Research
来源
Biophysical Reviews | 2022年 / 14卷
关键词
Molecular dynamics; Coulombic energy; Electrostatic interaction; Cutoff-based method; Electrostatic neutrality; Non-Ewald method; Reaction field method;
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摘要
In molecular simulations, it is essential to properly calculate the electrostatic interactions of particles in the physical system of interest. Here we consider a method called the non-Ewald method, which does not rely on the standard Ewald method with periodic boundary conditions, but instead relies on the cutoff-based techniques. We focus on the physicochemical and mathematical conceptual aspects of the method in order to gain a deeper understanding of the simulation methodology. In particular, we take into account the reaction field (RF) method, the isotropic periodic sum (IPS) method, and the zero-multipole summation method (ZMM). These cutoff-based methods are based on different physical ideas and are completely distinguishable in their underlying concepts. The RF and IPS methods are “additive” methods that incorporate information outside the cutoff region, via dielectric medium and isotropic boundary condition, respectively. In contrast, the ZMM is a “subtraction” method that tries to remove the artificial effects, generated near the boundary, from the cutoff sphere. Nonetheless, we find physical and/or mathematical similarities between these methods. In particular, the modified RF method can be derived by the principle of neutralization utilized in the ZMM, and we also found a direct relationship between IPS and ZMM.
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页码:1315 / 1340
页数:25
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