Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

[1] Bruggen EFJV(1966)Circular mitochondrial dna Biochim Biophys Acta (BBA) - Nucleic Acids Protein Synth 119 437-9

[2] Borst P(2013)Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach Nucleic Acids Res 41 129-9

[3] Ruttenberg GJCM(2016)NOVOPlasty: de novo assembly of organelle genomes from whole genome data Nucleic Acids Res 9 955-13

[4] Gruber M(1988)Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells J Cell Physiol 136 507-40

[5] Kroon AM(2017)Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae) Mitochondrial DNA B 2 139-6

[6] Hahn C(2016)AdapterRemoval v2: rapid adapter trimming, identification, and read merging BMC Res Notes 9 88-95

[7] Bachmann L(2015)Megahit: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de bruijn graph Bioinformatics 31 1674-28

[8] Chevreux B(2010)Fast and accurate long-read alignment with Burrows–Wheeler transform Bioinformatics 26 589-10

[9] Dierckxsens N(2012)IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth Bioinformatics 28 1420-312

[10] Mardulyn P(2010)Quake: quality-aware detection and correction of sequencing errors Genome Biol 11 116-803

[1] Bruggen EFJV(1966)Circular mitochondrial dna Biochim Biophys Acta (BBA) - Nucleic Acids Protein Synth 119 437-9

[2] Borst P(2013)Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach Nucleic Acids Res 41 129-9

[3] Ruttenberg GJCM(2016)NOVOPlasty: de novo assembly of organelle genomes from whole genome data Nucleic Acids Res 9 955-13

[4] Gruber M(1988)Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells J Cell Physiol 136 507-40

[5] Kroon AM(2017)Complete mitochondrial genome of the Oriental Hornet, Vespa orientalis F. (Hymenoptera: Vespidae) Mitochondrial DNA B 2 139-6

[6] Hahn C(2016)AdapterRemoval v2: rapid adapter trimming, identification, and read merging BMC Res Notes 9 88-95

[7] Bachmann L(2015)Megahit: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de bruijn graph Bioinformatics 31 1674-28

[8] Chevreux B(2010)Fast and accurate long-read alignment with Burrows–Wheeler transform Bioinformatics 26 589-10

[9] Dierckxsens N(2012)IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth Bioinformatics 28 1420-312

[10] Mardulyn P(2010)Quake: quality-aware detection and correction of sequencing errors Genome Biol 11 116-803