Rare genetic coding variants associated with human longevity and protection against age-related diseases

被引:28
作者
Lin, Jhih-Rong [1 ]
Sin-Chan, Patrick [2 ]
Napolioni, Valerio [3 ]
Torres, Guillermo G. [4 ]
Mitra, Joydeep [1 ]
Zhang, Quanwei [1 ]
Jabalameli, M. Reza [1 ]
Wang, Zhen [1 ]
Nha Nguyen [1 ]
Gao, Tina [5 ]
Laudes, Matthias [6 ]
Goerg, Siegfried [7 ]
Franke, Andre [4 ]
Nebel, Almut [4 ]
Greicius, Michael D. [8 ]
Atzmon, Gil [5 ,9 ]
Ye, Kenny [10 ]
Gorbunova, Vera [11 ]
Ladiges, Warren C. [12 ]
Shuldiner, Alan R. [2 ]
Niedernhofer, Laura J. [13 ,14 ]
Robbins, Paul D. [13 ,14 ]
Milman, Sofiya [1 ,5 ]
Suh, Yousin [1 ,15 ,16 ]
Vijg, Jan [1 ]
Barzilai, Nir [1 ,5 ]
Zhang, Zhengdong D. [1 ]
机构
[1] Albert Einstein Coll Med, Dept Genet, New York, NY 10461 USA
[2] Regeneron Pharmaceut Inc, New York, NY USA
[3] Univ Camerino, Sch Biosci & Vet Med, Camerino, Italy
[4] Univ Kiel, Inst Clin Mol Biol, Kiel, Germany
[5] Albert Einstein Coll Med, Dept Med, New York, NY USA
[6] Univ Kiel, Dept Internal Med 1, Div Endocrinol Diabet & Clin Nutr, Kiel, Germany
[7] Univ Hosp Schleswig Holstein, Inst Transfus Med, Lubeck, Germany
[8] Stanford Univ, Sch Med, Dept Neurol & Neurol Sci, Stanford, CA 94305 USA
[9] Univ Haifa, Fac Nat Sci, Dept Biol, Haifa, Israel
[10] Albert Einstein Coll Med, Dept Epidemiol & Populat Hlth, New York, NY USA
[11] Univ Rochester, Dept Biol, Rochester, NY 14627 USA
[12] Univ Washington, Sch Med, Dept Comparat Med, Seattle, WA USA
[13] Univ Minnesota, Inst Biol Aging & Metab, Minneapolis, MN USA
[14] Univ Minnesota, Dept Biochem Mol Biol & Biophys, Minneapolis, MN USA
[15] Columbia Univ, Dept Obstet & Gynecol, Irving Med Ctr, New York, NY USA
[16] Columbia Univ, Dept Genet & Dev, Irving Med Ctr, New York, NY USA
来源
NATURE AGING | 2021年 / 1卷 / 09期
关键词
GENOME-WIDE ASSOCIATION; SET ENRICHMENT ANALYSIS; LIFE-SPAN; CARDIOVASCULAR-DISEASE; APOLIPOPROTEIN-E; WEB SERVER; RISK; EXPRESSION; RESISTANCE; STRESS;
D O I
10.1038/s43587-021-00108-5
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Extreme longevity in humans has a strong genetic component, but whether this involves genetic variation in the same longevity pathways as found in model organisms is unclear. Using whole-exome sequences of a large cohort of Ashkenazi Jewish centenarians to examine enrichment for rare coding variants, we found most longevity-associated rare coding variants converge upon conserved insulin/insulin-like growth factor1 signaling and AMP-activating protein kinase signaling pathways. Centenarians have a number of pathogenic rare coding variants similar to control individuals, suggesting that rare variants detected in the conserved longevity pathways are protective against age-related pathology. Indeed, we detected a pro-longevity effect of rare coding variants in the Wnt signaling pathway on individuals harboring the known common risk allele APOE4. The genetic component of extreme human longevity constitutes, at least in part, rare coding variants in pathways that protect against aging, including those that control longevity in model organisms.
引用
收藏
页码:783 / +
页数:22
相关论文
共 76 条
[11]   PRSice-2: Polygenic Risk Score software for biobank-scale data [J].
Choi, Shing Wan ;
O'Reilly, Paul F. .
GIGASCIENCE, 2019, 8 (07)
[12]   The quest for genetic determinants of human longevity: challenges and insights [J].
Christensen, Kaare ;
Johnson, Thomas E. ;
Vaupel, James W. .
NATURE REVIEWS GENETICS, 2006, 7 (06) :436-448
[13]   Extension of life-span by loss of CHICO, a Drosophila insulin receptor substrate protein [J].
Clancy, DJ ;
Gems, D ;
Harshman, LG ;
Oldham, S ;
Stocker, H ;
Hafen, E ;
Leevers, SJ ;
Partridge, L .
SCIENCE, 2001, 292 (5514) :104-106
[14]   Evolution of a Human-Specific Tandem Repeat Associated with ALS [J].
Course, Meredith M. ;
Gudsnuk, Kathryn ;
Smukowski, Samuel N. ;
Winston, Kosuke ;
Desai, Nitin ;
Ross, Jay P. ;
Sulovari, Arvis ;
Bourassa, Cynthia, V ;
Spiegelman, Dan ;
Couthouis, Julien ;
Yu, Chang-En ;
Tsuang, Debby W. ;
Jayadev, Suman ;
Kay, Mark A. ;
Gitler, Aaron D. ;
Dupre, Nicolas ;
Eichler, Evan E. ;
Dion, Patrick A. ;
Rouleau, Guy A. ;
Valdmanis, Paul N. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2020, 107 (03) :445-460
[15]   Next-generation genotype imputation service and methods [J].
Das, Sayantan ;
Forer, Lukas ;
Schoenherr, Sebastian ;
Sidore, Carlo ;
Locke, Adam E. ;
Kwong, Alan ;
Vrieze, Scott I. ;
Chew, Emily Y. ;
Levy, Shawn ;
McGue, Matt ;
Schlessinger, David ;
Stambolian, Dwight ;
Loh, Po-Ru ;
Iacono, William G. ;
Swaroop, Anand ;
Scott, Laura J. ;
Cucca, Francesco ;
Kronenberg, Florian ;
Boehnke, Michael ;
Abecasis, Goncalo R. ;
Fuchsberger, Christian .
NATURE GENETICS, 2016, 48 (10) :1284-1287
[16]  
Deelen J, 2019, NAT COMMUN, V10, DOI [10.1038/s41467-019-11558-2, 10.1038/s41467-019-11311-9]
[17]   Gene set analysis of GWAS data for human longevity highlights the relevance of the insulin/IGF-1 signaling and telomere maintenance pathways [J].
Deelen, Joris ;
Uh, Hae-Won ;
Monajemi, Ramin ;
van Heemst, Diana ;
Thijssen, Peter E. ;
Bohringer, Stefan ;
van den Akker, Erik B. ;
de Craen, Anton J. M. ;
Rivadeneira, Fernando ;
Uitterlinden, Andre G. ;
Westendorp, Rudi G. J. ;
Goeman, Jelle J. ;
Slagboom, P. Eline ;
Houwing-Duistermaat, Jeanine J. ;
Beekman, Marian .
AGE, 2013, 35 (01) :235-249
[18]   Inactivating Variants in ANGPTL4 and Risk of Coronary Artery Disease [J].
Dewey, Frederick F. ;
Gusarova, Viktoria ;
O'Dushlaine, Colm ;
Gottesman, Omri ;
Trejos, Jesus ;
Hunt, Charleen ;
Van Hout, Cristopher V. ;
Habegger, Lukas ;
Buckler, David ;
Lai, Ka-Man V. ;
Leader, Joseph B. ;
Murray, Michael F. ;
Ritchie, Marylyn D. ;
Kirchner, H. Lester ;
Ledbetter, David H. ;
Penn, John ;
Lopez, Alexander ;
Borecki, Ingrid B. ;
Overton, John D. ;
Reid, Jeffrey G. ;
Carey, David J. ;
Murphy, Andrew J. ;
Yancopoulos, George D. ;
Baras, Aris ;
Gromada, Jesper ;
Shuldiner, Alan R. .
NEW ENGLAND JOURNAL OF MEDICINE, 2016, 374 (12) :1123-1133
[19]   Apolipoprotein E polymorphism and cardiovascular disease: A HuGE review [J].
Eichner, JE ;
Dunn, ST ;
Perveen, G ;
Thompson, DM ;
Stewart, KE ;
Stroehla, BC .
AMERICAN JOURNAL OF EPIDEMIOLOGY, 2002, 155 (06) :487-495
[20]   Whole-Genome Sequencing of a Healthy Aging Cohort [J].
Erikson, Galina A. ;
Bodian, Dale L. ;
Rueda, Manuel ;
Molparia, Bhuvan ;
Scott, Erick R. ;
Scott-Van Zeeland, Ashley A. ;
Topol, Sarah E. ;
Wineinger, Nathan E. ;
Niederhuber, John E. ;
Topol, Eric J. ;
Torkamani, Ali .
CELL, 2016, 165 (04) :1002-1011