Integrating protein-protein interactions and text mining for protein function prediction

被引：0
作者：
Samira Jaeger
Sylvain Gaudan
Ulf Leser
Dietrich Rebholz-Schuhmann
机构：
[1] Humboldt-University Berlin,Knowledge Management in Bioinformatics
[2] Wellcome Trust Genome Campus,European Bioinformatics Institute
来源：
BMC Bioinformatics | / 9卷
关键词：
Gene Ontology; Text Mining; Orthologous Protein; Average Recall; Protein Function Prediction;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Information assessment on predicting protein-protein interactions
    Nan Lin
    Baolin Wu
    Ronald Jansen
    Mark Gerstein
    Hongyu Zhao
    BMC Bioinformatics, 5
  • [32] Protein-protein interaction network constructing based on text mining and reinforcement learning with application to prostate cancer
    Zhu, Fei
    Liu, Quan
    Zhang, Xiaofang
    Shen, Bairong
    2014 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2014,
  • [33] PROSNET: INTEGRATING HOMOLOGY WITH MOLECULAR NETWORKS FOR PROTEIN FUNCTION PREDICTION
    Wang, Sheng
    Qui, Meng
    Peng, Jian
    PACIFIC SYMPOSIUM ON BIOCOMPUTING 2017, 2017, : 27 - 38
  • [34] Sequential Pattern Mining for Protein Function Prediction
    Wang, Miao
    Shang, Xue-qun
    Li, Zhan-huai
    ADVANCED DATA MINING AND APPLICATIONS, PROCEEDINGS, 2008, 5139 : 652 - 658
  • [35] Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network
    Christine Brun
    François Chevenet
    David Martin
    Jérôme Wojcik
    Alain Guénoche
    Bernard Jacq
    Genome Biology, 5 (1)
  • [36] Collective prediction of protein functions from protein-protein interaction networks
    Wu, Qingyao
    Ye, Yunming
    Ng, Michael K.
    Ho, Shen-Shyang
    Shi, Ruichao
    BMC BIOINFORMATICS, 2014, 15
  • [37] InfersentPPI: Prediction of Protein-Protein Interaction Using Protein Sentence Embedding With Gene Ontology Information
    Li, Meijing
    Jiang, Yingying
    Ryu, Keun Ho
    FRONTIERS IN GENETICS, 2022, 13
  • [38] Advances in Computational Methods for Protein-Protein Interaction Prediction
    Xian, Lei
    Wang, Yansu
    ELECTRONICS, 2024, 13 (06)
  • [39] Collective prediction of protein functions from protein-protein interaction networks
    Qingyao Wu
    Yunming Ye
    Michael K Ng
    Shen-Shyang Ho
    Ruichao Shi
    BMC Bioinformatics, 15
  • [40] Protein-Protein Interaction Network Extraction Using Text Mining Methods Adds Insight into Autism Spectrum Disorder
    Nezamuldeen, Leena
    Jafri, Mohsin Saleet
    BIOLOGY-BASEL, 2023, 12 (10):
12345