Integrating protein-protein interactions and text mining for protein function prediction

被引:0
|
作者
Samira Jaeger
Sylvain Gaudan
Ulf Leser
Dietrich Rebholz-Schuhmann
机构
[1] Humboldt-University Berlin,Knowledge Management in Bioinformatics
[2] Wellcome Trust Genome Campus,European Bioinformatics Institute
来源
BMC Bioinformatics | / 9卷
关键词
Gene Ontology; Text Mining; Orthologous Protein; Average Recall; Protein Function Prediction;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Integrating protein-protein interactions and text mining for protein function prediction
    Jaeger, Samira
    Gaudan, Sylvain
    Leser, Ulf
    Rebholz-Schuhmann, Dietrich
    BMC BIOINFORMATICS, 2008, 9 (Suppl 8)
  • [2] Mining new protein-protein interactions
    Mamitsuka, H
    IEEE ENGINEERING IN MEDICINE AND BIOLOGY MAGAZINE, 2005, 24 (03): : 103 - 108
  • [3] Mining from protein-protein interactions
    Mamitsuka, Hiroshi
    WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY, 2012, 2 (05) : 400 - 410
  • [4] Mining literature for protein-protein interactions
    Marcotte, EM
    Xenarios, I
    Eisenberg, D
    BIOINFORMATICS, 2001, 17 (04) : 359 - 363
  • [5] PIE: an online prediction system for protein-protein interactions from text
    Kim, Sun
    Shin, Soo-Yong
    Lee, In-Hee
    Kim, Soo-Jin
    Sriram, Ram
    Zhang, Byoung-Tak
    NUCLEIC ACIDS RESEARCH, 2008, 36 : W411 - W415
  • [6] HIME: Mining and Ensembling Heterogeneous Information for Protein-Protein Interactions Prediction
    Chen, Huaming
    Jin, Yaochu
    Wang, Lei
    Chi, Chi-Hung
    Shen, Jun
    2020 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN), 2020,
  • [7] Improving the prediction of yeast protein function using weighted protein-protein interactions
    Ahmed, Khaled S.
    Saloma, Nahed H.
    Kadah, Yasser M.
    THEORETICAL BIOLOGY AND MEDICAL MODELLING, 2011, 8
  • [8] Protein Function Assignment through Mining Cross-Species Protein-Protein Interactions
    Chen, Xue-wen
    Liu, Mei
    Ward, Robert
    PLOS ONE, 2008, 3 (02):
  • [9] Computational prediction of protein-protein interactions
    Skrabanek, Lucy
    Saini, Harpreet K.
    Bader, Gary D.
    Enright, Anton J.
    MOLECULAR BIOTECHNOLOGY, 2008, 38 (01) : 1 - 17
  • [10] Prediction and redesign of protein-protein interactions
    Lua, Rhonald C.
    Marciano, David C.
    Katsonis, Panagiotis
    Adikesavan, Anbu K.
    Wilkins, Angela D.
    Lichtarge, Olivier
    PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2014, 116 (2-3): : 194 - 202