trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios

[1] Choi Y(2018)Comparison of phasing strategies for whole human genomes PLoS Genet 14 e1007308-358

[2] Chan AP(2015)Haplotype-resolved genome sequencing: experimental methods and applications Nat Rev Genet 16 344-397

[3] Kirkness E(2020)Compound heterozygous variants in pediatric cancers: a systematic review Front Genet 11 493-696

[4] Telenti A(2021)a survey of compound heterozygous variants in pediatric cancers and structural birth defects Front Genet 12 363-23

[5] Schork NJ(2019)Accurate, scalable and integrative haplotype estimation Nat Commun 10 5436-79

[6] Snyder MW(2021)Computational methods for chromosome-scale haplotype reconstruction Genome Biol 22 101-566

[7] Adey A(2011)Chromosomal haplotypes by genetic phasing of human families Am J Hum Genet 89 382-2464

[8] Kitzman JO(2013)Haplotype estimation using sequencing reads Am J Hum Genet 93 687-311

[9] Shendure J(2019)The importance of data compression in the field of genomics IEEE Pulse 10 20-undefined

[10] Miller D(2020)CompoundHetVIP: compound heterozygous variant identification pipeline F1000Res 9 1211-undefined

[1] Choi Y(2018)Comparison of phasing strategies for whole human genomes PLoS Genet 14 e1007308-358

[2] Chan AP(2015)Haplotype-resolved genome sequencing: experimental methods and applications Nat Rev Genet 16 344-397

[3] Kirkness E(2020)Compound heterozygous variants in pediatric cancers: a systematic review Front Genet 11 493-696

[4] Telenti A(2021)a survey of compound heterozygous variants in pediatric cancers and structural birth defects Front Genet 12 363-23

[5] Schork NJ(2019)Accurate, scalable and integrative haplotype estimation Nat Commun 10 5436-79

[6] Snyder MW(2021)Computational methods for chromosome-scale haplotype reconstruction Genome Biol 22 101-566

[7] Adey A(2011)Chromosomal haplotypes by genetic phasing of human families Am J Hum Genet 89 382-2464

[8] Kitzman JO(2013)Haplotype estimation using sequencing reads Am J Hum Genet 93 687-311

[9] Shendure J(2019)The importance of data compression in the field of genomics IEEE Pulse 10 20-undefined

[10] Miller D(2020)CompoundHetVIP: compound heterozygous variant identification pipeline F1000Res 9 1211-undefined