Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling

[11] Li H(2011)Low-coverage sequencing: implications for design of complex trait association studies Genome Res 21 940-223

[12] Daetwyler HD(2013)Sequencing millions of animals for genomic selection 20 J Anim Breed Genet 130 331-126

[13] Capitan A(1997)The value of using probabilities of gene origin to measure genetic variability in a population Genet Sel Evol. 29 5-1287

[14] Pausch H(2012)Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population Genetics 190 679-355

[15] Stothard P(2016)Reducing animal sequencing redundancy by preferentially selecting animals with low-frequency haplotypes J Dairy Sci 99 5526-2223

[16] van Binsbergen R(2017)A method for the allocation of sequencing resources in genotyped livestock populations Genet Sel Evol. 49 47-142

[17] Brondum RF(2017)A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals Genet Sel Evol. 49 78-1420

[18] Nicod J(2019)Optimizing selection of the reference population for genotype imputation from array to sequence variants Front Genet. 10 510-469

[19] Davies RW(2014)Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals Genet Sel Evol. 46 46-1449

[20] Cai N(2017)Identification of key contributors in complex population structures PLoS ONE 12 e0177638-1753

[11] Li H(2011)Low-coverage sequencing: implications for design of complex trait association studies Genome Res 21 940-223

[12] Daetwyler HD(2013)Sequencing millions of animals for genomic selection 20 J Anim Breed Genet 130 331-126

[13] Capitan A(1997)The value of using probabilities of gene origin to measure genetic variability in a population Genet Sel Evol. 29 5-1287

[14] Pausch H(2012)Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population Genetics 190 679-355

[15] Stothard P(2016)Reducing animal sequencing redundancy by preferentially selecting animals with low-frequency haplotypes J Dairy Sci 99 5526-2223

[16] van Binsbergen R(2017)A method for the allocation of sequencing resources in genotyped livestock populations Genet Sel Evol. 49 47-142

[17] Brondum RF(2017)A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals Genet Sel Evol. 49 78-1420

[18] Nicod J(2019)Optimizing selection of the reference population for genotype imputation from array to sequence variants Front Genet. 10 510-469

[19] Davies RW(2014)Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals Genet Sel Evol. 46 46-1449

[20] Cai N(2017)Identification of key contributors in complex population structures PLoS ONE 12 e0177638-1753