Species identification and phylogenetic analysis of genus Nassarius (Nassariidae) based on mitochondrial genes

被引:0
作者
Haitao Li
Duan Lin
Hongda Fang
Aijia Zhu
Yang Gao
机构
[1] State Oceanic Administration,South China Sea Environmental Monitoring Center
来源
Chinese Journal of Oceanology and Limnology | 2010年 / 28卷
关键词
species identification; mtCOI gene; mt16S rRNA gene;
D O I
暂无
中图分类号
学科分类号
摘要
Genus Nassarius contains many subgenera, such as Zeuxis, Telasco, Niotha, Varicinassa, Plicarcularia, Nassarius s. str. and Reticunassa. On the basis of morphological characteristics of the shell and radula and sequences of mitochondrial cytochrome oxidase subunit I (COI) and 16S rRNA genes, Nassarius specimens collected from the South China Sea were identified and phylogenetically analyzed. Although Nassarius sp. and Nassarius (Varicinassa) variciferus were morphologically different in their shells, few variations were found among their radular teeth and sequences of mtCOI and mt16S RNA genes. Therefore, Nassarius sp. should be classified as N. (Varicinassa) variciferus. Nassarius (Zeuxis) sp. has only a subtle difference from Nassarius (Zeuxis) algidus on the shell, but it shows obvious differences in radular teeth and DNA sequence, indicating that they are two distinct species. Sequence divergence of mtCOI and mt16S RNA genes within Nassarius species was much lower than that between species, suggesting that these two genes are suitable for Nassarius species identification. Phylogenetic analysis (neighbor-joining and maximum parsimony) based on mtCOI and mt16S rRNA genes revealed the presence of two groups in genus Nassarius and a closest relationship between subgenera Zeuxis and Telasco. Species of subgenus Plicarcularia did not form a single clade. The molecular phylogeny was not congruent with the previous morphological phylogeny. The subgeneric divisions of genus Nassarius appear to be uncertain and unreliable.
引用
收藏
页码:565 / 572
页数:7
相关论文
共 50 条
[41]   Differentiation of fish species by PCR-based DNA analysis of nuclear genes [J].
Hartmut Rehbein .
European Food Research and Technology, 2013, 236 :979-990
[42]   Species identification in mammals from mixed biological samples based on mitochondrial DNA control region length polymorphism [J].
Pun, Ka-Man ;
Albrecht, Catherine ;
Castella, Vincent ;
Fumagalli, Luca .
ELECTROPHORESIS, 2009, 30 (06) :1008-1014
[43]   SPECIES IDENTIFICATION OF TEN COMMON FARM ANIMALS BASED ON MITOCHONDRIAL 12S rRNA GENE POLYMORPHISMS [J].
Chen, Shi-Yi ;
Yao, Yong-Gang ;
Liu, Yi-Ping .
ANIMAL BIOTECHNOLOGY, 2012, 23 (03) :213-220
[44]   Detection of mislabeling in hake seafood employing mtSNPs-based methodology with identification of eleven hake species of the genus Merluccius [J].
Machado-Schiaffino, G. ;
Martinez, J. L. ;
Garcia-Vazquez, E. .
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2008, 56 (13) :5091-5095
[45]   Molecular Identification of Dendrobium Species (Orchidaceae) Based on the DNA Barcode ITS2 Region and Its Application for Phylogenetic Study [J].
Feng, Shangguo ;
Jiang, Yan ;
Wang, Shang ;
Jiang, Mengying ;
Chen, Zhe ;
Ying, Qicai ;
Wang, Huizhong .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 16 (09) :21975-21988
[46]   Identification of species in animal feedstuffs by polymerase chain reaction-restriction fragment length polymorphism analysis of mitochondrial DNA [J].
Bellagamba, F ;
Moretti, VM ;
Comincini, S ;
Valfrè, F .
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2001, 49 (08) :3775-3781
[47]   Identification of four Thunnus tuna species using mitochondrial cytochrome b gene sequence and PCR-RFLP analysis [J].
Lin, WF ;
Shiau, CY ;
Hwang, DF .
JOURNAL OF FOOD AND DRUG ANALYSIS, 2005, 13 (04) :382-387
[48]   Infestation Levels and Molecular Identification Based on Mitochondrial COI Barcode Region of Five Invasive Gelechiidae Pest Species in Kenya [J].
Kinyanjui, G. ;
Khamis, F. M. ;
Ombura, F. L. O. ;
Kenya, E. U. ;
Ekesi, S. ;
Mohamed, S. A. .
JOURNAL OF ECONOMIC ENTOMOLOGY, 2019, 112 (02) :872-882
[49]   Species identification of Pinctada imbricata using intergenic spacer of nuclear ribosomal RNA genes and mitochondrial 16S ribosomal RNA gene regions [J].
Masaoka, T ;
Kobayashi, T .
FISHERIES SCIENCE, 2005, 71 (04) :837-846
[50]   Species identification of Pinctada imbricata using intergenic spacer of nuclear ribosomal RNA genes and mitochondrial 16S ribosomal RNA gene regions [J].
Tetsuji Masaoka ;
Takanori Kobayashi .
Fisheries Science, 2005, 71 :837-846