Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

被引:0
作者
Kevin Y Yip
Chao Cheng
Nitin Bhardwaj
James B Brown
Jing Leng
Anshul Kundaje
Joel Rozowsky
Ewan Birney
Peter Bickel
Michael Snyder
Mark Gerstein
机构
[1] Yale University,Program in Computational Biology and Bioinformatics
[2] Yale University,Department of Molecular Biophysics and Biochemistry
[3] The Chinese University of Hong Kong,Department of Computer Science and Engineering
[4] The Chinese University of Hong Kong,Hong Kong Bioinformatics Centre
[5] The Chinese University of Hong Kong,CUHK
[6] University of California at Berkeley,BGI Innovation Institute of Trans
[7] Stanford University,omics
[8] Wellcome Trust Genome Campus,Department Statistics
[9] Stanford University School of Medicine,Department of Computer Science
[10] Yale University,European Bioinformatics Institute (EMBL
来源
Genome Biology | / 13卷
关键词
Histone Modification; Open Chromatin; Chromatin Feature; Binding Peak; Potential Enhancer;
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[41]  
Coulombe B(2007)Gene expression signatures of seven individual human embryonic stem cell lines Cell 128 707-21936
[42]  
Robert F(2007)Comprehensive and definitive molecular cytogenetic characterization of HeLa cells by spectral karyotyping Nature 448 553-112
[43]  
Su J(2010)Charting histone modifications and the functional organization of mammalian genomes Proc Natl Acad Sci USA 107 21931-391
[44]  
Teichmann SA(2009)Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome Nature 459 108-2421
[45]  
Down TA(2005)High-resolution profiling of histone methylations in the human genome Mol Cell 19 381-396
[46]  
Johnson DS(2008)The role of chromatin during transcription Oncogene 27 2412-1245
[47]  
Mortazavi A(1999)Genome-wide maps of chromatin state in pluripotent and lineage-committed cells Cell 98 387-433
[48]  
Myers RM(2007)Histone H3K27ac separates active from poised enhancers and predicts developmental state Cell 128 1231-801
[49]  
Wold B(2008)Histone modifications at human enhancers reflect global cell-type-specific gene expression Cell 132 422-527
[50]  
Robertson G(2008)Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin Nature 451 796-1037