Predicting microbial interactions with approaches based on flux balance analysis: an evaluation

被引:0
|
作者
Clémence Joseph
Haris Zafeiropoulos
Kristel Bernaerts
Karoline Faust
机构
[1] KU Leuven,Department of Microbiology, Immunology and Transplantation, Rega Institute for Medical Research, Laboratory of Molecular Bacteriology
[2] KU Leuven,Department of Chemical Engineering, Chemical and Biochemical Reactor Engineering and Safety (CREaS)
来源
关键词
Flux balance analysis; Metabolic modelling; Microbial interactions;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Predicting microbial interactions with approaches based on flux balance analysis: an evaluation
    Joseph, Clemence
    Zafeiropoulos, Haris
    Bernaerts, Kristel
    Faust, Karoline
    BMC BIOINFORMATICS, 2024, 25 (01)
  • [2] Predicting microbial interactions through computational approaches
    Li, Chenhao
    Lim, Kun Ming Kenneth
    Chng, Kern Rei
    Nagarajan, Niranjan
    METHODS, 2016, 102 : 12 - 19
  • [3] Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics
    Kuang, Ellen
    Marney, Matthew
    Cuevas, Daniel
    Edwards, Robert A.
    Forsberg, Erica M.
    METABOLITES, 2020, 10 (04)
  • [4] Dynamic flux balance analysis for synthetic microbial communities
    Henson, Michael A.
    Hanly, Timothy J.
    IET SYSTEMS BIOLOGY, 2014, 8 (05) : 214 - 229
  • [5] Multi-faceted approaches to discovering and predicting microbial nutritional interactions
    Gude, Sebastian
    Taga, Michiko E.
    CURRENT OPINION IN BIOTECHNOLOGY, 2020, 62 : 58 - 64
  • [6] Community Flux Balance Analysis for Microbial Consortia at Balanced Growth
    Khandelwal, Ruchir A.
    Olivier, Brett G.
    Roling, Wilfred F. M.
    Teusink, Bas
    Bruggeman, Frank J.
    PLOS ONE, 2013, 8 (05):
  • [7] Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook
    Qiu, Sizhe
    Yang, Aidong
    Zeng, Hong
    PLOS COMPUTATIONAL BIOLOGY, 2023, 19 (08)
  • [8] Effect of microbial interactions on performance of community metabolic modeling algorithms: flux balance analysis (FBA), community FBA (cFBA) and SteadyCom
    Afarin, Maryam
    Naeimpoor, Fereshteh
    BIOPROCESS AND BIOSYSTEMS ENGINEERING, 2024, 47 (11) : 1833 - 1848
  • [10] Differential Bees Flux Balance Analysis with OptKnock for In Silico Microbial Strains Optimization
    Choon, Yee Wen
    Mohamad, Mohd Saberi
    Deris, Safaai
    Illias, Rosli Md
    Chong, Chuii Khim
    Chai, Lian En
    Omatu, Sigeru
    Manuel Corchado, Juan
    PLOS ONE, 2014, 9 (07):