Structure conversions of cellulose IIII crystal models in solution state: a molecular dynamics study

被引:0
|
作者
Toshifumi Yui
Naofumi Okayama
Sachio Hayashi
机构
[1] University of Miyazaki,Department of Applied Chemistry, Faculty of Engineering
来源
Cellulose | 2010年 / 17卷
关键词
Cellulose III; Molecular dynamics; Crystal conversion; Chain staggering; Intrasheet hydrogen bond; Hydroxymethyl group conformation;
D O I
暂无
中图分类号
学科分类号
摘要
This paper re-examines our previous molecular dynamics (MD) study on cellulose IIII crystal models with finite dimensions solvated in explicit water molecules. Eight crystal models, differing in a constituent lattice plane and dimensions, were studied. One calculation allowed for O–H and C–H bond stretching, and had a small time step of 0.5 fs. The other calculation adopted non-scaling factors of the 1–4 non-bonded interactions. As in our previous study, in the former MD calculations, six of the eight crystal models exhibited structure conversion with cooperative chain slippages generated by a progressive fiber bend. This converted the initial non-staggered chain packing of cellulose IIII into a near one-quarter staggering and gave the crystal model a triclinic-like configuration. In contrast, in the non-1–4 scaling MD calculations, all of the eight crystal models retained the initial cellulose IIII crystal structure. Another series of non-1–4 scaling MD calculations were performed for the four crystal models containing chains with a degree of polymerization (DP) of 40 at 370 K, which simulated hot water treatment to convert cellulose IIII to Iβ. Some of the hydroxymethyl groups irreversibly rotated from gt into tg conformation. This accompanied exchange of the intrasheet hydrogen bonding scheme along the (1 −1 0) lattice plane from O2–O6 to O3–O6. The original corrugated (1 −1 0) chain sheet was partly converted into a cellulose I-like flat chain sheet.
引用
收藏
页码:679 / 691
页数:12
相关论文
共 50 条
  • [21] Effect of water models on structure and dynamics of lignin in solution
    Huda, Md Masrul
    Jahan, Nusrat
    Rai, Neeraj
    AIP ADVANCES, 2021, 11 (06)
  • [22] Molecular dynamics simulation of the structure and dynamics of a dodecylphosphocholine micelle in aqueous solution
    Wymore, T
    Gao, XF
    Wong, TC
    JOURNAL OF MOLECULAR STRUCTURE, 1999, 485 : 195 - 210
  • [23] Molecular simulation study with complex models of the carbohydrate binding module of Cel6A and the cellulose Iα crystal
    Shiiba, Hirohide
    Hayashi, Sachio
    Yui, Toshifumi
    CELLULOSE, 2012, 19 (03) : 635 - 645
  • [24] Molecular simulation study with complex models of the carbohydrate binding module of Cel6A and the cellulose Iα crystal
    Hirohide Shiiba
    Sachio Hayashi
    Toshifumi Yui
    Cellulose, 2012, 19 : 635 - 645
  • [25] Molecular dynamics study of host–guest interactions in cyclodextrins: methodology and data analysis for a comparison with solution data and the solid-state structure
    Giuseppina Raffaini
    Fabio Ganazzoli
    Journal of Inclusion Phenomena and Macrocyclic Chemistry, 2007, 57 : 683 - 688
  • [26] The structure of liquid methanol: A molecular dynamics study using three-site models
    Bianchi, L
    Kalugin, ON
    Adya, AK
    Wormald, CJ
    MOLECULAR SIMULATION, 2000, 25 (05) : 321 - 338
  • [27] Molecular dynamics models of pores in the liquid monoethanolamine structure
    Belashchenko, D. K.
    Rodnikova, M. N.
    Balabaev, N. K.
    Solonina, I. A.
    RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A, 2016, 90 (01) : 100 - 104
  • [28] Molecular dynamics models of pores in the liquid monoethanolamine structure
    D. K. Belashchenko
    M. N. Rodnikova
    N. K. Balabaev
    I. A. Solonina
    Russian Journal of Physical Chemistry A, 2016, 90 : 100 - 104
  • [29] STRUCTURE AND DYNAMICS OF Zr4+ IN AQUEOUS SOLUTION: AN AB INITIO QM/MM MOLECULAR DYNAMICS STUDY
    Suwardi
    Pranowo, Harno Dwi
    Armunanto, Ria
    INDONESIAN JOURNAL OF CHEMISTRY, 2015, 15 (02) : 155 - 162
  • [30] A molecular dynamics study of the thermal response of crystalline cellulose Iβ
    Qiong Zhang
    Vincent Bulone
    Hans Ågren
    Yaoquan Tu
    Cellulose, 2011, 18 : 207 - 221