The complete chloroplast genome of Cupressus chengiana

被引：0
作者：
Zi-long Zhang
Li-ying Ma
Hongbin Yao
Xin Yang
Ji-huai Luo
Xue Gong
Shuo-yue Wei
Quan-fang Li
Wei Wang
Hong-bin Sun
机构：
[1] Key Laboratory of Science and Technology Research and Application,
来源：
Conservation Genetics Resources | 2017年 / 9卷
关键词：
Chloroplast genome; Phylogenetic analysis;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
The whole chloroplast (cp) genome sequence of Cupressus chengiana has been characterized from Illumina pair-end sequencing. The circular genome is 128,151 bp in length with 115 single copy genes and two duplicated genes (trnl-CAU, trnQ-UUG). This genome contains 82 protein-coding genes, 31 tRNA genes and four ribosomal RNA genes (four rRNA species). In these genes, eight genes (atpF, ndhA, ndhB, rpoC1, petD, petB, rpl16 and rpl2) harbor a single intron and two genes (rps12 and ycf3) harbor two introns. This cp genome does not contain canonical IRs, and the overall GC content is 34.7%. Further, phylogenetic analysis suggested that C. chengiana is closely related to the species of C. gigantea.
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页码：347 / 349
页数：2
相关论文
共 18 条
[1]  
Doyle JJ(1987)A rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochem bull 19 11-15
[2]  
Huang DI(2015)Plann: a command-line application for annotating plastome sequences Appl. Plant Sci 3 1500026-780
[3]  
Cronk QCB(2013)MAFFT multiple sequence alignment software version 7: improvements in performance and usability Mol Biol Evol 30 772-1649
[4]  
Katoh K(2012)Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data Bioinformatics 28 1647-17
[5]  
Standley DM(2001)Natural features of Arid river valleys in Western Sichuan and their vegetation restoring and reestablishing ways J Sichuan For Sci Technol 22 10-W581
[6]  
Kearse M(2013)OrganellarGenomeDRAW - a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets Nucleic Acids Res 41 W575-1313
[7]  
Moir R(2014)RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Bioinformatics 30 1312-829
[8]  
Wilson A(2008)Velvet: algorithms for de novo short read assembly using de Bruijn graphs Genome Res 18 821-undefined
[9]  
Liu XL(undefined)undefined undefined undefined undefined-undefined
[10]  
Mu CL(undefined)undefined undefined undefined undefined-undefined
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