Predicting and improving the protein sequence alignment quality by support vector regression

[1] Marti-Renom MA(2000)Comparative protein structure modeling of genes and genomes Annu Rev Biophys Biomol Struct 29 291-325

[2] Stuart AC(2003)CASP5 assessment of fold recognition target predictions Proteins 53 Suppl 6 395-409

[3] Fiser A(1993)Comparative protein modelling by satisfaction of spatial restraints J Mol Biol 234 779-815

[4] Sanchez R(2004)The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms Nucleic Acids Res 32 D196-9

[5] Melo F(1997)Progress in protein structure prediction Curr Opin Struct Biol 7 377-387

[6] Sali A(1981)Identification of common molecular subsequences J Mol Biol 147 195-197

[7] Kinch LN(1990)Basic local alignment search tool J Mol Biol 215 403-410

[8] Wrabl JO(1997)Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389-3402

[9] Krishna SS(1999)IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices Bioinformatics 15 1000-1011

[10] Majumdar I(2004)Using evolutionary information for the query and target improves fold recognition Proteins 54 342-350

[1] Marti-Renom MA(2000)Comparative protein structure modeling of genes and genomes Annu Rev Biophys Biomol Struct 29 291-325

[2] Stuart AC(2003)CASP5 assessment of fold recognition target predictions Proteins 53 Suppl 6 395-409

[3] Fiser A(1993)Comparative protein modelling by satisfaction of spatial restraints J Mol Biol 234 779-815

[4] Sanchez R(2004)The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms Nucleic Acids Res 32 D196-9

[5] Melo F(1997)Progress in protein structure prediction Curr Opin Struct Biol 7 377-387

[6] Sali A(1981)Identification of common molecular subsequences J Mol Biol 147 195-197

[7] Kinch LN(1990)Basic local alignment search tool J Mol Biol 215 403-410

[8] Wrabl JO(1997)Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389-3402

[9] Krishna SS(1999)IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices Bioinformatics 15 1000-1011

[10] Majumdar I(2004)Using evolutionary information for the query and target improves fold recognition Proteins 54 342-350