GIANT: pattern analysis of molecular interactions in 3D structures of protein–small ligand complexes

被引:0
作者
Kota Kasahara
Kengo Kinoshita
机构
[1] Tohoku University,Graduate School of Information Sciences
[2] Tohoku University,Tohoku Medical Megabank Organization
[3] Tohoku University,Institute of Development, Aging, and Cancer
[4] Osaka University,Institute for Protein Research
来源
BMC Bioinformatics | / 15卷
关键词
Molecular recognition; Ligand binding site; Protein–ligand interactions; Protein structure; Protein function; Pattern recognition; Database; Web-server;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 63 条
[1]  
Berman H(2007)The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data Nucleic Acids Res 35 D301-D303
[2]  
Henrick K(2010)A medicinal chemist’s guide to molecular interactions J Med Chem 53 5061-5084
[3]  
Nakamura H(2004)PDBLIG: classification of small molecular protein binding in the Protein Data Bank J Med Chem 47 3807-3816
[4]  
Markley JL(2004)Het-PDB Navi.: a database for protein-small molecule interactions J Biochem 135 79-84
[5]  
Bissantz C(2004)Ligand Depot: a data warehouse for ligands bound to macromolecules Bioinformatics 20 2153-2155
[6]  
Kuhn B(2011)sc-PDB: a database for identifying variations and multiplicity of “druggable” binding sites in proteins Bioinformatics 27 1324-1326
[7]  
Stahl M(2008)Protein ligand interaction database (PLID) Comput Biol Chem 32 387-390
[8]  
Chalk AJ(2003)Relibase: design and development of a database for comprehensive analysis of protein–ligand interactions J Mol Biol 326 607-620
[9]  
Worth CL(2009)CREDO: a protein-ligand interaction database for drug discovery Chem Biol Drug Des 73 157-167
[10]  
Overington JP(2013)PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures Bioinformatics 29 395-397